View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_high_16 (Length: 402)
Name: NF5329_high_16
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Original strand, 16627828 - 16628205
Alignment:
| Q |
15 |
accattctcaacttttcacactctttctatacataaagtatacatcttccagctgaaacaaacaacgcaaatgggaatgcatcaacagaattcccaacca |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
16627828 |
accattcttaacttttcacactctttctatacataaagtatacatcttccagctgaaacaaacaacgcaaatggtaatgaatcaacagaattcccaacca |
16627927 |
T |
|
| Q |
115 |
ccatacattgaggcaaatgttccaccaccattaacatgtgcatattcaaggattgcttctctagcacaacgttcccatgctctagctacatccttaatca |
214 |
Q |
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| T |
16627928 |
ccatacattgaggtaaatgttccaccaccattaacatgtgcatattcaaggattgcttctctagcacaaccttcccatgctctagctacatccttaatca |
16628027 |
T |
|
| Q |
215 |
accatggttgcttcatgctttccagattaactctcagttttccttttgctctctcaaacaaagctctaaagtcctcactgcatgtaattcaaattatgaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16628028 |
accatggttgcttcatgctttccagattaactctcagctttccttttgctctctcaaacaaatctctaaagtcctcactgcatgtaattcaaattatgaa |
16628127 |
T |
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| Q |
315 |
acacatattatggtcaacaattatatattgcaaatataatcaatccatcatctatcaaacagaaacttcctcatctgt |
392 |
Q |
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| T |
16628128 |
acacatattatggtcaacaattatatattgcaaatataatcaatccatcatctatcaaacagaaacttcctcatctgt |
16628205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Original strand, 16636709 - 16637086
Alignment:
| Q |
15 |
accattctcaacttttcacactctttctatacataaagtatacatcttccagctgaaacaaacaacgcaaatgggaatgcatcaacagaattcccaacca |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
16636709 |
accattcttaacttttcacactctttctatacataaagtatacatcttccagctgaaacaaacaacgcaaatggtaatgaatcaacagaattcccaacca |
16636808 |
T |
|
| Q |
115 |
ccatacattgaggcaaatgttccaccaccattaacatgtgcatattcaaggattgcttctctagcacaacgttcccatgctctagctacatccttaatca |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16636809 |
ccatacattgaggtaaatgttccaccaccattaacatgtgcatattcaaggattgcttctctagcacaaccttcccatgctctagctacatccttaatca |
16636908 |
T |
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| Q |
215 |
accatggttgcttcatgctttccagattaactctcagttttccttttgctctctcaaacaaagctctaaagtcctcactgcatgtaattcaaattatgaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16636909 |
accatggttgcttcatgctttccagattaactctcagctttccttttgctctctcaaacaaatctctaaagtcctcactgcatgtaattcaaattatgaa |
16637008 |
T |
|
| Q |
315 |
acacatattatggtcaacaattatatattgcaaatataatcaatccatcatctatcaaacagaaacttcctcatctgt |
392 |
Q |
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| T |
16637009 |
acacatattatggtcaacaattatatattgcaaatataatcaatccatcatctatcaaacagaaacttcctcatctgt |
16637086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 106 - 351
Target Start/End: Original strand, 16615821 - 16616065
Alignment:
| Q |
106 |
tcccaaccaccatacattgaggcaaatgttccaccaccattaacatgtgcatattcaaggattgcttctctagcacaacgttcccatgctctagctacat |
205 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16615821 |
tcccaaccaccatacattgaggtaaatgttccaccaccattagcatgtgcatattcaaggattgcttctctagcacaaccttcccatgctctagctacat |
16615920 |
T |
|
| Q |
206 |
ccttaatcaaccatggttgcttcatgctttccagattaactctcagttttccttttgctctctcaaacaaagctctaaagtcctcactgcatgtaattca |
305 |
Q |
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||||||||||||||||||||||| |||||| ||| |||| |||||| ||| |||||||| ||||||| | |||||| | ||| ||||||||||||| ||| |
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| T |
16615921 |
ccttaatcaaccatggttgcttcgtgctttgcagtttaagtctcagctttgcttttgctttctcaaaaagagctctcaggtcatcactgcatgtaa-tca |
16616019 |
T |
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| Q |
306 |
aattatgaaacacatattatggtcaacaattatatattgcaaatat |
351 |
Q |
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|||||||||||||| ||||||||||||| |||| ||||||||||| |
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| T |
16616020 |
aattatgaaacacaaattatggtcaacagctatacattgcaaatat |
16616065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 155 - 372
Target Start/End: Original strand, 38876797 - 38877015
Alignment:
| Q |
155 |
catattcaaggattgcttctctagcacaacgttcccatgctctagctacatccttaatcaaccatggttgcttcatgctttccagattaactctcagttt |
254 |
Q |
| |
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|||| ||||| ||||| ||| || |||||| |||||||||||| | || ||||||||||||||||| || ||||||||||| ||||||| |||||| || |
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| T |
38876797 |
cataatcaagaattgcatctttaacacaactttcccatgctcttgttatatccttaatcaaccatgtttcgttcatgctttcaagattaaatctcagctt |
38876896 |
T |
|
| Q |
255 |
tccttttgctctctcaaacaaagctctaaagtcctcactgcatgtaattcaaattatgaaacacatattatggtcaacaattatatattgcaaatataat |
354 |
Q |
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| |||||||||| ||||| | |||||| | ||||||||||||||| ||||||||||| ||||||| ||| ||||||||| |||||||||||||| ||| |
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| T |
38876897 |
tgcttttgctctttcaaatagagctctcaggtcctcactgcatgtcattcaaattattaaacacaagttaaggtcaacaactatatattgcaaatcaaat |
38876996 |
T |
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| Q |
355 |
-caatccatcatctatcaa |
372 |
Q |
| |
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||||||||||||||||| |
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| T |
38876997 |
ataatccatcatctatcaa |
38877015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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