View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_high_18 (Length: 346)
Name: NF5329_high_18
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 36955277 - 36954960
Alignment:
| Q |
1 |
atgctccaacctttaatacata--acatctgaaacatccatagttgagtttaagttgctattaatattgattatagttatagagcaaaaccaaatccata |
98 |
Q |
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| T |
36955277 |
atgctccaacctttaatacatataacatctgaaacatccatagttgagtttaagttgctattaatattgattatag------agcaaaaccaaatccata |
36955184 |
T |
|
| Q |
99 |
atgacaaagcaaaatggcattgtaaaaacagatgatgagaagaatatgcttgcttgttgtacaagttataaattgaggggtgattgcaaccccttctcat |
198 |
Q |
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| T |
36955183 |
atgacaaagcaaaatggcattgtaaaaacagatgatgagaaaaatatgcttgcttgttgtacaagttataaattgaggggtgattgcaaccccttctcat |
36955084 |
T |
|
| Q |
199 |
caaacattcctatggatgcactcgatctattatgaattgatctctatatcaagagagatttggaaggaggtaaggctttattccaaat-ataattgtcca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
36955083 |
caaacattcctatggatgcactcgatctattatgaattgatctctatatcaagagagatttgg--------aaggctttattccaaataataattgtcca |
36954992 |
T |
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| Q |
298 |
tttaaaatcctgactagcattgatgtgaaaaa |
329 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36954991 |
tttaaaatcctgactagcattgatgtgaaaaa |
36954960 |
T |
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