View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_high_19 (Length: 344)
Name: NF5329_high_19
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 37063648 - 37063976
Alignment:
| Q |
1 |
ttgttatgcaaatccagtattatgagatcggtaaacaagtccatggatggaggaacttcaccagttagcatattactttccatgaaaaggaaagataagc |
100 |
Q |
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| T |
37063648 |
ttgttatgcaaatccagtattatgagatcgataaacaagtccatggatggaggaacttcaccagttagcatattactttccatgaaaaggaaagataagc |
37063747 |
T |
|
| Q |
101 |
ctttccaatactcccaacaatcaggaatttctccggttaaaagattgaatgaaatgtccaaataatccaaactattttccctacctaatctgtggcagaa |
200 |
Q |
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| T |
37063748 |
ctttccaatactcccaacaatcaggaatttctccggttaaaagattgaatgaaatgtccaaataatccaaactattttccctacctaatctgtggcagaa |
37063847 |
T |
|
| Q |
201 |
cataggggaaatggttccaaagaaagaattgtgtgacaaatccaaatagatgacatttgctgatatatgtgggagccctcctctgaaattattgtggtcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37063848 |
cataggggaaatggttccaaagaaagaattgtgtgacaaatccaaatagatgacatttgctgatatatgtgggagccctcctctgaaattattgtggtcc |
37063947 |
T |
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| Q |
301 |
ataaatagaagttccgagtttagcgtgac |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
37063948 |
ataaatagaagttccgagtttagcgtgac |
37063976 |
T |
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