View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329_high_2 (Length: 559)

Name: NF5329_high_2
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329_high_2
NF5329_high_2
[»] chr3 (3 HSPs)
chr3 (20-556)||(31187921-31188458)
chr3 (136-201)||(25838080-25838145)
chr3 (137-186)||(43751792-43751841)
[»] chr7 (1 HSPs)
chr7 (138-192)||(3255158-3255212)
[»] chr6 (2 HSPs)
chr6 (136-186)||(20207190-20207240)
chr6 (136-186)||(22101213-22101263)
[»] chr2 (1 HSPs)
chr2 (137-186)||(10696380-10696429)
[»] chr1 (2 HSPs)
chr1 (137-178)||(434989-435030)
chr1 (135-179)||(7439097-7439141)
[»] chr5 (1 HSPs)
chr5 (135-187)||(28503271-28503323)


Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Original strand, 31187921 - 31188458
Alignment:
Q  20 acactcataattcgttagagttatggttttcaactaaattattaagactgcttctttttccatcctataaatttctcacacactttatgcagtttgaatt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||    
T  31187921 acactcataattcgttagagttatggttttcaactaaattattaagacggtttctttttccatcctataaatttctcacacgctttatgcagtttggatt 31188020  T
Q  120 atacattacgaacaacataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataaagcgcacgaaaaataatattttagattataga 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  31188021 atacattacgaacaacataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataaagcgcacgaaaaacaatattttaaattataga 31188120  T
Q  220 atctgaataaggtgcccgaaaaacctgtaaaatggaaaaagtaatgactaattattatttcccccttgattgtgtgttggcccaaacaaagggagttaaa 319  Q
    |||||||||||| || ||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31188121 atctgaataaggcgcacgaaaaacctgtaaaacagaaaaaataatgactaattattatttcccccttgattgtttgttggcccaaacaaagggagttaaa 31188220  T
Q  320 atcctttccatttgtcaaaacaaatggggttgatgaaactctctattg-ttattgaagcctgtgtgaatttcactcacaatagcaaaatagcaagctatg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  31188221 atcctttccatttgtcaaaacaaatggggttgatgaaactctctatggtttattaaagcttgtgtgaatttcactcacaatagcaaaatagcaagctatg 31188320  T
Q  419 cctgcagaataatttaaagtaacatgttacaagagatgggttgtcaacacgtggagggtcacaatgttgttattatgagtatagttgcggtgtcatcatg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31188321 cctgcagaataatttaaagtaacatgttacaagagatgggttgtcaacacgtggagggtcacaatgttgttattatgagtatagttgcggtgtcatcatg 31188420  T
Q  519 gtcaagagttacatatttttaattctctccctatgatt 556  Q
    ||||||||||||||||||||||||||||| || |||||    
T  31188421 gtcaagagttacatatttttaattctctctctttgatt 31188458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 25838145 - 25838080
Alignment:
Q  136 ataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataaagcgcacgaaaaat 201  Q
    |||||||| ||||||| | ||||||||||||| |||| ||||||| |||||   ||||||||||||    
T  25838145 ataaaaacctcaaaaacatgttgaaatattttggattttagaatctgaataggacgcacgaaaaat 25838080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 43751841 - 43751792
Alignment:
Q  137 taaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 186  Q
    ||||| ||||||||| | ||| |||||||||||||| |||||||||||||    
T  43751841 taaaatcttcaaaaacacgttaaaatattttagattttagaatccgaata 43751792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 3255158 - 3255212
Alignment:
Q  138 aaaaacttcaaaaataggttgaaatattttagattatagaatccgaataaagcgc 192  Q
    |||| |||||||||||  ||||||||||||||||| ||||||||||||| |||||    
T  3255158 aaaaccttcaaaaatatattgaaatattttagattttagaatccgaatagagcgc 3255212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 20207190 - 20207240
Alignment:
Q  136 ataaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 186  Q
    |||||||||||||||| | |||||||||||| ||||| ||||||| |||||    
T  20207190 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaata 20207240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 22101213 - 22101263
Alignment:
Q  136 ataaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 186  Q
    |||||||||||||||| | |||||||||||| ||||| ||||||| |||||    
T  22101213 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaata 22101263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 10696380 - 10696429
Alignment:
Q  137 taaaaacttcaaaaataggttgaaatattttagattatagaatccgaata 186  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||| ||||||    
T  10696380 taaaaccttcaaaaatacgttgaaatattttggattttagaattcgaata 10696429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 434989 - 435030
Alignment:
Q  137 taaaaacttcaaaaataggttgaaatattttagattatagaa 178  Q
    ||||||||||||||| | |||||||||||||||||| |||||    
T  434989 taaaaacttcaaaaacatgttgaaatattttagattttagaa 435030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 7439097 - 7439141
Alignment:
Q  135 cataaaaacttcaaaaataggttgaaatattttagattatagaat 179  Q
    ||||||| ||||||||| | |||||||||||||||||| ||||||    
T  7439097 cataaaaccttcaaaaacacgttgaaatattttagattttagaat 7439141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 28503271 - 28503323
Alignment:
Q  135 cataaaaacttcaaaaataggttgaaatattttagattatagaatccgaataa 187  Q
    ||||||||| || |||||| |||||||||||| ||||| |||||| |||||||    
T  28503271 cataaaaacctccaaaatacgttgaaatatttcagattttagaattcgaataa 28503323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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