View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329_high_20 (Length: 341)

Name: NF5329_high_20
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329_high_20
NF5329_high_20
[»] chr6 (36 HSPs)
chr6 (17-337)||(27604394-27604715)
chr6 (26-337)||(26802619-26802928)
chr6 (25-337)||(27677313-27677624)
chr6 (25-334)||(27706100-27706409)
chr6 (25-322)||(27592717-27593015)
chr6 (25-337)||(27679123-27679436)
chr6 (167-339)||(27718219-27718391)
chr6 (167-339)||(27610842-27611014)
chr6 (130-337)||(27698297-27698504)
chr6 (97-337)||(26884342-26884580)
chr6 (182-337)||(27427461-27427616)
chr6 (176-331)||(28786461-28786616)
chr6 (176-331)||(28792582-28792737)
chr6 (176-336)||(26861791-26861951)
chr6 (176-337)||(28781316-28781477)
chr6 (257-339)||(27724775-27724857)
chr6 (110-337)||(27530983-27531207)
chr6 (140-282)||(25538772-25538914)
chr6 (176-304)||(27214630-27214758)
chr6 (176-304)||(27234470-27234598)
chr6 (152-282)||(25579951-25580081)
chr6 (152-282)||(26143097-26143227)
chr6 (260-338)||(28098302-28098380)
chr6 (115-282)||(26646711-26646875)
chr6 (115-282)||(26752679-26752843)
chr6 (240-306)||(25506897-25506963)
chr6 (185-282)||(26656221-26656318)
chr6 (185-282)||(26762192-26762289)
chr6 (216-337)||(28234740-28234861)
chr6 (267-339)||(31284463-31284535)
chr6 (235-334)||(26949841-26949940)
chr6 (17-70)||(27427302-27427356)
chr6 (235-304)||(25071869-25071938)
chr6 (185-282)||(27337923-27338020)
chr6 (185-282)||(27398663-27398760)
chr6 (242-322)||(26848852-26848932)
[»] scaffold0349 (2 HSPs)
scaffold0349 (167-339)||(14196-14368)
scaffold0349 (167-337)||(3260-3431)
[»] scaffold0277 (2 HSPs)
scaffold0277 (185-339)||(4529-4683)
scaffold0277 (185-337)||(13490-13642)
[»] scaffold0003 (2 HSPs)
scaffold0003 (182-337)||(59747-59902)
scaffold0003 (17-70)||(60007-60061)
[»] chr4 (11 HSPs)
chr4 (182-337)||(18073939-18074094)
chr4 (185-276)||(18731349-18731440)
chr4 (176-265)||(18655313-18655402)
chr4 (176-265)||(18723921-18724010)
chr4 (17-66)||(18679251-18679301)
chr4 (185-275)||(18699245-18699335)
chr4 (176-275)||(18679403-18679502)
chr4 (17-70)||(18074199-18074253)
chr4 (17-66)||(18655161-18655211)
chr4 (17-66)||(18699084-18699134)
chr4 (17-66)||(18723769-18723819)
[»] scaffold0419 (1 HSPs)
scaffold0419 (185-337)||(7702-7854)
[»] chr1 (4 HSPs)
chr1 (177-339)||(28127516-28127678)
chr1 (177-273)||(28164200-28164296)
chr1 (185-256)||(268202-268273)
chr1 (27-70)||(268050-268094)
[»] scaffold0038 (1 HSPs)
scaffold0038 (216-337)||(34902-35023)
[»] chr2 (1 HSPs)
chr2 (236-322)||(17993593-17993679)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 27604394 - 27604715
Alignment:
Q  17 actattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattga 115  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27604394 actattttgacatataaataactaatacttgtttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattga 27604493  T
Q  116 aattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctc 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  27604494 aattgaataaagaaaatacaaaagggaaaaataggatttatgtagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctc 27604593  T
Q  216 agagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgat 315  Q
    ||||||||||||||||||||||||||||  ||||| | || ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||| ||||    
T  27604594 agagccactttccatcgctgcaacctctttatgttatcctcatcattttgaaacctttttttatgctcagccaatgcttgaccgtaactacctttatgat 27604693  T
Q  316 ttcgcacgttagtaggttccac 337  Q
     |||||| | || |||||||||    
T  27604694 gtcgcacatgagaaggttccac 27604715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 26 - 337
Target Start/End: Complemental strand, 26802928 - 26802619
Alignment:
Q  26 acatataaataactaatactt-tttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaata 124  Q
    ||||||||||||||||||||| |||||||||||| |||| ||||||||||   | ||||||||||| || |||||||||||||| ||||||| ||||| |    
T  26802928 acatataaataactaatacttgtttaaaaacgtatataagaaaggtattt---cccatttaacctttaagatgagattattgggaaattgaagttgaaga 26802832  T
Q  125 aagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccact 224  Q
    || |||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  26802831 aataaaatataaaagggaaaaataggatttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagccact 26802732  T
Q  225 ttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgt 324  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||| | | ||||  ||||| |    
T  26802731 ttccatcgctccaacctctccatgttatccttatcattttgaaaccttttttcatgctcagccaatgcttcaccatagctacatgtatgatggcgcacat 26802632  T
Q  325 tagtaggttccac 337  Q
    ||||||| |||||    
T  26802631 tagtaggatccac 26802619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 337
Target Start/End: Original strand, 27677313 - 27677624
Alignment:
Q  25 gacatataaataactaatact--ttttaaaaacgtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaa 122  Q
    ||||||||||||||||||| |  ||||||||  ||| |||||||||||||||   | | ||||||||| || |||||||||||| | ||||||| |||||    
T  27677313 gacatataaataactaatagtacttttaaaactgtatataaaaaaggtattt---cccttttaacctttaagatgagattattgtgaaattgaagttgaa 27677409  T
Q  123 taaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagcca 222  Q
     ||| |||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||     
T  27677410 gaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcct 27677509  T
Q  223 ctttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcac 322  Q
    ||||||||| |||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27677510 ctttccatccctgcaacctctccatgcttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcac 27677609  T
Q  323 gttagtaggttccac 337  Q
      |||||||||||||    
T  27677610 aatagtaggttccac 27677624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 27706100 - 27706409
Alignment:
Q  25 gacatataaataactaata---ctttttaaaaac-gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattg 120  Q
    |||||||||||||||||||   ||| || ||||| ||| |||||||||||||||     | ||||| ||| || |||||||||||| | ||||||| |||    
T  27706100 gacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtatttc----cctttaaactttaagatgagattattgtgaaattgaagttg 27706195  T
Q  121 aataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagc 220  Q
    || ||| |||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  27706196 aagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagc 27706295  T
Q  221 cactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgc 320  Q
    | ||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||    
T  27706296 ctctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgc 27706395  T
Q  321 acgttagtaggttc 334  Q
    ||  ||||||||||    
T  27706396 acaatagtaggttc 27706409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 25 - 322
Target Start/End: Original strand, 27592717 - 27593015
Alignment:
Q  25 gacatataaataactaata---ctttttaaaaac-gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattg 120  Q
    |||||||||||||||||||   ||| || ||||| ||| |||||||||||||||   | | ||||||||| || ||||||||||||   ||||||| |||    
T  27592717 gacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtattt---cccttttaacctttaagatgagattattgtaaaattgaagttg 27592813  T
Q  121 aataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagc 220  Q
    || ||| |||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  27592814 aagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagc 27592913  T
Q  221 cactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgc 320  Q
      ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  27592914 gtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcgc 27593013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 25 - 337
Target Start/End: Complemental strand, 27679436 - 27679123
Alignment:
Q  25 gacatataaataactaata---ctttttaaaaac-gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattg 120  Q
    |||||||||||||||||||   ||| || ||||| ||| |||||||||||||||   | | ||||||||| || ||||||||||||   ||||||| |||    
T  27679436 gacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtattt---cccttttaacctttaagatgagattattgtaaaattgaagttg 27679340  T
Q  121 aataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagc 220  Q
    || ||| |||||| |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  27679339 aagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagc 27679240  T
Q  221 cactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgc 320  Q
    |  ||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||    
T  27679239 ctttttccatccttgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgc 27679140  T
Q  321 acgttagtaggttccac 337  Q
    ||   ||||||||||||    
T  27679139 acaacagtaggttccac 27679123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 167 - 339
Target Start/End: Original strand, 27718219 - 27718391
Alignment:
Q  167 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 266  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27718219 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttga 27718318  T
Q  267 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccacgc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27718319 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgc 27718391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 167 - 339
Target Start/End: Original strand, 27610842 - 27611014
Alignment:
Q  167 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 266  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  27610842 gtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttga 27610941  T
Q  267 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccacgc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  27610942 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcactttagtaggttccacgc 27611014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 130 - 337
Target Start/End: Original strand, 27698297 - 27698504
Alignment:
Q  130 aatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttcca 229  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  27698297 aatacaaaagggaaatataggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttcca 27698396  T
Q  230 tcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagta 329  Q
    || ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| || ||| |||||     
T  27698397 tccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctttgccataactacctttatgatgtctcacattagtt 27698496  T
Q  330 ggttccac 337  Q
    ||||||||    
T  27698497 ggttccac 27698504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 337
Target Start/End: Complemental strand, 26884580 - 26884342
Alignment:
Q  97 gagattattgggcaatt-gaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccgg 195  Q
    |||||||||||| |||| |||||| || |||||||||| ||||  | |||||| ||||||||||| || |  |||| | ||   |||  |||||||||||    
T  26884580 gagattattggggaatttgaaattaaagaaagaaaatataaaaaaggaaaatatgatttaagtaaagtgggatacccaaga---ctaaaatggtagccgg 26884484  T
Q  196 aaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttc 295  Q
    | ||||||||| | || |||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||    
T  26884483 acaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttttttcatggtcagccaatgcttc 26884384  T
Q  296 accataactacctttctgatttcgcacgttagtaggttccac 337  Q
    ||||||||||||| | |||| |||||| | |||||| |||||    
T  26884383 accataactacctgtatgatgtcgcacatcagtaggatccac 26884342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 182 - 337
Target Start/End: Original strand, 27427461 - 27427616
Alignment:
Q  182 atcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgc 281  Q
    ||||||||||| ||  |||||||||||  | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  27427461 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 27427560  T
Q  282 tcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccac 337  Q
    ||||||||||||| |||||| |||||| | |||| |||||| | ||||||||||||    
T  27427561 tcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccac 27427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 176 - 331
Target Start/End: Complemental strand, 28786616 - 28786461
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 275  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28786616 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28786517  T
Q  276 tcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtagg 331  Q
    |||||| ||||||||||||||||||||| |||| | |||| |||||| ||||||||    
T  28786516 tcatgcccagccaatgcttcaccataacgacctgtatgatgtcgcacattagtagg 28786461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 176 - 331
Target Start/End: Complemental strand, 28792737 - 28792582
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 275  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28792737 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28792638  T
Q  276 tcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtagg 331  Q
    |||||| ||||||||||||||||||||| |||| | |||| |||||| ||||||||    
T  28792637 tcatgcccagccaatgcttcaccataacgacctgtatgatgtcgcacattagtagg 28792582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 336
Target Start/End: Complemental strand, 26861951 - 26861791
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 275  Q
    |||||||  ||||||||| || ||||||||||| ||| ||||||| |||||||||| |||||||||||||||||| | | |||||||||||||||| |||    
T  26861951 aggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttt 26861852  T
Q  276 tcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttcca 336  Q
    ||||||| ||||||||||||||||||| ||||| | |||| |||||| |||||||| ||||    
T  26861851 tcatgcttagccaatgcttcaccataaatacctctatgatgtcgcacattagtaggatcca 26861791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 176 - 337
Target Start/End: Complemental strand, 28781477 - 28781316
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 275  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28781477 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28781378  T
Q  276 tcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccac 337  Q
    |||||  ||||||||||||||||||||  |||| | |||| |||||| |||||||| |||||    
T  28781377 tcatgtccagccaatgcttcaccataaggacctgtatgatgtcgcacattagtaggatccac 28781316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 27724775 - 27724857
Alignment:
Q  257 atcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccacgc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27724775 atcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgc 27724857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 110 - 337
Target Start/End: Original strand, 27530983 - 27531207
Alignment:
Q  110 aattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagca 209  Q
    |||||||||| || |||||||||| |||||||||||||||||||||||||| || |  |||| | |     ||| ||| | ||| || |||||||| ||     
T  27530983 aattgaaattaaagaaagaaaatataaaagggaaaaataggatttaagtaaagtgggctacccatgtt---tataatgctggccagacaagttagccgct 27531079  T
Q  210 tggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctt 309  Q
    |||||||||||  |||||||| |||||||||||||  |||| | |||||||||||||||| | |||| |||| |||| |||||||||||||| ||||||     
T  27531080 tggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgcttcaccatatctacctg 27531179  T
Q  310 tctgatttcgcacgttagtaggttccac 337  Q
    | |||| |||||| | |||||| |||||    
T  27531180 tgtgatgtcgcacatcagtaggatccac 27531207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 282
Target Start/End: Complemental strand, 25538914 - 25538772
Alignment:
Q  140 ggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaac 239  Q
    ||||||| | ||||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  ||||     
T  25538914 ggaaaaacaagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaat 25538815  T
Q  240 ctctccatgtttttcttatcattttgaaacctcttttcatgct 282  Q
    | |||||||||||||| || |||||||||||||| ||||||||    
T  25538814 cgctccatgtttttctcattattttgaaacctctcttcatgct 25538772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 27214758 - 27214630
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 275  Q
    |||||||| ||| ||||| || ||||||||||| ||| | ||||| |  ||||||  |||||||| ||||||||||| ||| | |||||||||||||| |    
T  27214758 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27214659  T
Q  276 tcatgctcagccaatgcttcaccataact 304  Q
    ||||||| ||| |  ||||||||||||||    
T  27214658 tcatgcttagcaagcgcttcaccataact 27214630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 27234470 - 27234598
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 275  Q
    |||||||| ||| ||||| || ||||||||||| ||| | ||||| |  ||||||  |||||||| ||||||||||| ||| | |||||||||||||| |    
T  27234470 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27234569  T
Q  276 tcatgctcagccaatgcttcaccataact 304  Q
    ||||||| ||| |  ||||||||||||||    
T  27234570 tcatgcttagcaagcgcttcaccataact 27234598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 282
Target Start/End: Complemental strand, 25580081 - 25579951
Alignment:
Q  152 tttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgttt 251  Q
    ||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  |||| | ||||||||||    
T  25580081 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgttt 25579982  T
Q  252 ttcttatcattttgaaacctcttttcatgct 282  Q
    ||||  | |||||||||||||| ||||||||    
T  25579981 ttctcgttattttgaaacctctcttcatgct 25579951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 282
Target Start/End: Complemental strand, 26143227 - 26143097
Alignment:
Q  152 tttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgttt 251  Q
    ||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  |||| | ||||||||||    
T  26143227 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgttt 26143128  T
Q  252 ttcttatcattttgaaacctcttttcatgct 282  Q
    ||||  | |||||||||||||| ||||||||    
T  26143127 ttctcgttattttgaaacctctcttcatgct 26143097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 338
Target Start/End: Original strand, 28098302 - 28098380
Alignment:
Q  260 attttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccacg 338  Q
    |||||| ||||||| |||||||| ||| ||||||||||||||||| ||  |||||| |||||||| || ||||||||||    
T  28098302 attttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacg 28098380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 282
Target Start/End: Complemental strand, 26646875 - 26646711
Alignment:
Q  115 aaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggct 214  Q
    ||||| ||||||||||||| |||| ||||||| | | ||||||||| || | ||||| ||||   |||| |||||| ||||| ||||||||||| ||| |    
T  26646875 aaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccagga---ctataatggtatccggacaagttagcagcttgggt 26646779  T
Q  215 cagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 282  Q
    ||||||||  |||||| | ||||| |  ||| |||||||||| | |||||| || |||| ||| ||||    
T  26646778 cagagccaacttccattgatgcaatcgttccttgtttttcttgttattttggaaactctcttcgtgct 26646711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 282
Target Start/End: Complemental strand, 26752843 - 26752679
Alignment:
Q  115 aaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggct 214  Q
    ||||| ||||||||||||| |||| ||||||| | | ||||||||| || | ||||| ||||   |||| |||||| ||||| ||||||||||| ||| |    
T  26752843 aaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccagga---ctataatggtatccggacaagttagcagcttgggt 26752747  T
Q  215 cagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 282  Q
    ||||||||  |||||| | ||||| |  ||| |||||||||| | |||||| || |||| ||| ||||    
T  26752746 cagagccaacttccattgatgcaatcgttccttgtttttcttgttattttggaaactctcttcgtgct 26752679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 25506897 - 25506963
Alignment:
Q  240 ctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactac 306  Q
    ||||||||||||||||||| |||||||||| ||| |||||||| || ||   |||||||||||||||    
T  25506897 ctctccatgtttttcttattattttgaaacttctcttcatgcttagtcagatcttcaccataactac 25506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 26656318 - 26656221
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 282  Q
    ||||||||| || ||||| ||||| | | |||||||||  |||||| ||| |||||||| |||||||| ||| | |||||| ||| ||||||||||||    
T  26656318 atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgct 26656221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 26762289 - 26762192
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 282  Q
    ||||||||| || ||||| ||||| | | |||||||||  |||||| ||| |||||||| |||||||| ||| | |||||| ||| ||||||||||||    
T  26762289 atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgct 26762192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 337
Target Start/End: Complemental strand, 28234861 - 28234740
Alignment:
Q  216 agagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgat 315  Q
    |||||||  ||||||  |||||||||||||||||| | ||| | |||||| ||| |||||  ||| ||| ||| ||||| ||||||||| || || ||||    
T  28234861 agagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatcatccagtgctttaccataactgcccttgtgat 28234762  T
Q  316 ttcgcacgttagtaggttccac 337  Q
     |||||||| || |||||||||    
T  28234761 gtcgcacgtgagaaggttccac 28234740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 31284535 - 31284463
Alignment:
Q  267 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccacgc 339  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | |||| |||||| | || ||| |||||||    
T  31284535 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgc 31284463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 26949940 - 26949841
Alignment:
Q  235 gcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttc 334  Q
    |||||| |||||||||||| ||    ||||| ||||||| |||||||| ||| | ||||||||||||||||   ||||||| |||||||| || ||||||    
T  26949940 gcaaccgctccatgttttttttgctcttttggaacctctcttcatgcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaaggttc 26949841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 27427302 - 27427356
Alignment:
Q  17 actattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaaaggt 70  Q
    |||||| |||||||||||||||||| | || ||||||||| ||||||||||||||    
T  27427302 actattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 27427356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 25071938 - 25071869
Alignment:
Q  235 gcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataact 304  Q
    |||||| |||||||| || ||| | ||||||||||| || |||||||| ||| |||| ||||||||||||    
T  25071938 gcaaccgctccatgtgttccttgttattttgaaacccctcttcatgcttagcaaatgattcaccataact 25071869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 27337923 - 27338020
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 282  Q
    ||||| |||||| ||||||||||| ||| | |||||||  ||||||  || ||||||||||||||||| ||| | |||||| ||| | | ||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27338020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 27398663 - 27398760
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 282  Q
    ||||| |||||| ||||||||||| ||| | |||||||  ||||||  || ||||||||||||||||| ||| | |||||| ||| | | ||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27398760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 26848932 - 26848852
Alignment:
Q  242 ctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcac 322  Q
    ||||||| ||| ||| | ||||||||||  || |||||||| ||| | |||||||||||||||||  ||||||| ||||||    
T  26848932 ctccatgctttccttgttattttgaaacacctcttcatgcttagcaagtgcttcaccataactactattctgatgtcgcac 26848852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 167 - 339
Target Start/End: Original strand, 14196 - 14368
Alignment:
Q  167 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 266  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||    
T  14196 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttga 14295  T
Q  267 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccacgc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14296 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgc 14368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 167 - 337
Target Start/End: Original strand, 3260 - 3431
Alignment:
Q  167 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatg-tttttcttatcattttg 265  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  3260 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcattttg 3359  T
Q  266 aaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccac 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||  |||||||||||||    
T  3360 aaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaatagtaggttccac 3431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 185 - 339
Target Start/End: Original strand, 4529 - 4683
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctca 284  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  285 gccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccacgc 339  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  4629 gccaatgcttcaccataactacctttcagatgtcgcacgttagtaggttccacgc 4683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 337
Target Start/End: Original strand, 13490 - 13642
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctca 284  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||| | ||||||||| |||||||||||||||||||||||||||||  ||    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 13589  T
Q  285 gccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccac 337  Q
    ||||||||||||||||||| |||| | |||| |||||| |||||||| |||||    
T  13590 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccac 13642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 182 - 337
Target Start/End: Complemental strand, 59902 - 59747
Alignment:
Q  182 atcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgc 281  Q
    ||||||||||| ||  |||||||||||  | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  59902 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 59803  T
Q  282 tcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccac 337  Q
    ||||||||||||| |||||| |||||| | |||| |||||| | ||||||||||||    
T  59802 tcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccac 59747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 60061 - 60007
Alignment:
Q  17 actattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaaaggt 70  Q
    |||||| |||||||||||||||||| | || ||||||||| ||||||||||||||    
T  60061 actattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 60007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 182 - 337
Target Start/End: Complemental strand, 18074094 - 18073939
Alignment:
Q  182 atcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgc 281  Q
    ||||||||||| ||  |||||||||||  | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  18074094 atcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttgaaacctattttcatgc 18073995  T
Q  282 tcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccac 337  Q
    ||||||||||||| |||||| |||||| | |||| |||||| | ||||||||||||    
T  18073994 tcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccac 18073939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 18731349 - 18731440
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctctttt 276  Q
    |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| ||||||||||||||| | |||||| || |||||||    
T  18731349 atggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttggaaactctttt 18731440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 18655313 - 18655402
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttg 265  Q
    |||||||  |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| ||||||||||||||| | ||||||    
T  18655313 aggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttg 18655402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 18723921 - 18724010
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttg 265  Q
    |||||||  |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| ||||||||||||||| | ||||||    
T  18723921 aggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttg 18724010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 18679251 - 18679301
Alignment:
Q  17 actattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaa 66  Q
    |||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  18679251 actattttgacttataaataactaatacttgtttaaaaacgtaaataaaaa 18679301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 18699245 - 18699335
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 275  Q
    |||||||||||| ||||||||||| | | ||||||| |  |||||| | ||||||| ||||||||||||||| | |||||| || ||||||    
T  18699245 atggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaaactcttt 18699335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 275
Target Start/End: Original strand, 18679403 - 18679502
Alignment:
Q  176 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 275  Q
    |||||||  |||||||||||| ||||||||||| | | ||||||| |  |||||| | ||||||| |||||||||||| || | |||||| || ||||||    
T  18679403 aggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttattgttattttggaaactcttt 18679502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 18074253 - 18074199
Alignment:
Q  17 actattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaaaggt 70  Q
    |||||| |||||||||||||||||| | || ||||||||| ||||||||||||||    
T  18074253 actattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 18074199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 18655161 - 18655211
Alignment:
Q  17 actattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaa 66  Q
    |||||| |||| |||||||||||||||||| |||||||| |||||||||||    
T  18655161 actattttgacttataaataactaatacttgtttaaaaatgtaaataaaaa 18655211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 18699084 - 18699134
Alignment:
Q  17 actattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaa 66  Q
    |||||| |||| |||||||||||||||||| ||||||||||||| ||||||    
T  18699084 actattttgacttataaataactaatacttgtttaaaaacgtaattaaaaa 18699134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 18723769 - 18723819
Alignment:
Q  17 actattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaa 66  Q
    |||||| |||| |||||||||||||||||| |||||||| |||||||||||    
T  18723769 actattttgacttataaataactaatacttgtttaaaaatgtaaataaaaa 18723819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 337
Target Start/End: Complemental strand, 7854 - 7702
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctca 284  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||| | ||||||||| |||||||||||||||||||||||||||||  ||    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 7755  T
Q  285 gccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccac 337  Q
    ||||||||||||||||||| |||| | |||| |||||| |||||||| |||||    
T  7754 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccac 7702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 339
Target Start/End: Original strand, 28127516 - 28127678
Alignment:
Q  177 ggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctctttt 276  Q
    ||||||| |||||||||||| ||||||||||| ||| | ||||| |  |||||| | ||||| | ||||||||||||||| | |||||| ||||||| |     
T  28127516 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctctc 28127615  T
Q  277 catgctcagccaatgcttcaccataactacctttctgatttcgcacgttagtaggttccacgc 339  Q
    |||||| ||| |   ||||||||||||| ||| | |||| |||||| | |||||| |||||||    
T  28127616 catgcttagcaagctcttcaccataactccctgtatgatatcgcacatcagtaggatccacgc 28127678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 28164200 - 28164296
Alignment:
Q  177 ggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctct 273  Q
    ||||||| |||||||||||| ||||||||||| ||| | ||||| |  |||||| | ||||| | ||||||||||||||| | |||||| |||||||    
T  28164200 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctct 28164296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 268202 - 268273
Alignment:
Q  185 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttctt 256  Q
    ||||||||| || ||||||| ||| ||| |||||||||  |||||| | ||||||| |||||||||||||||    
T  268202 atggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatgtttttctt 268273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 268050 - 268094
Alignment:
Q  27 catataaataactaatactt-tttaaaaacgtaaataaaaaaggt 70  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||    
T  268050 catataaacaactaatacttatttagaaacgtaaataaaaaaggt 268094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 337
Target Start/End: Complemental strand, 35023 - 34902
Alignment:
Q  216 agagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgat 315  Q
    |||||||  ||||||  |||||||||||||||||| | ||| | |||||| ||| |||||  ||| ||| ||| ||||| ||||||||| || || ||||    
T  35023 agagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatcatccagtgctttaccataactgcccttgtgat 34924  T
Q  316 ttcgcacgttagtaggttccac 337  Q
     |||||||| || |||||||||    
T  34923 gtcgcacgtgagaaggttccac 34902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 17993593 - 17993679
Alignment:
Q  236 caacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatttcgcac 322  Q
    ||||| ||||||||||| |||   ||||||||| | || |||||||| ||| | |||||||||||||||| | ||||||| ||||||    
T  17993593 caaccgctccatgttttccttgctattttgaaaaccctcttcatgcttagcaagtgcttcaccataactatcattctgatgtcgcac 17993679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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