View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329_high_30 (Length: 245)

Name: NF5329_high_30
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329_high_30
NF5329_high_30
[»] chr1 (1 HSPs)
chr1 (35-234)||(4239550-4239746)
[»] chr3 (3 HSPs)
chr3 (35-129)||(19921719-19921810)
chr3 (49-129)||(19938589-19938669)
chr3 (178-234)||(19938667-19938720)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 4239550 - 4239746
Alignment:
Q  35 agcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttccagctcc 134  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239550 agcagttgtgttgatca---ttttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttccagctcc 4239646  T
Q  135 aaggatgatgataaatttgtgtcacgtgcactgcttgaatccaccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatgatg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239647 aaggatgatgataaatttgtgtcacgtgcactgcttgaatccaccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatgatg 4239746  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 19921719 - 19921810
Alignment:
Q  35 agcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttcca 129  Q
    |||||||||||||||||   |||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  19921719 agcagttgtgttgatca---ttttattcattaacctcatctttgaagacatccatttctcagacccgtaactattctttttgctgctatcttcca 19921810  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 19938589 - 19938669
Alignment:
Q  49 tcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttcca 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||    
T  19938589 tcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactattctttttattgctatcatcca 19938669  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 19938667 - 19938720
Alignment:
Q  178 ccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatgatg 234  Q
    ||||||||||||||| ||||||||||||||   ||||||| ||||||||||||||||    
T  19938667 ccataactgactcacatgatgaattataga---gttgttggtgattgcttgatgatg 19938720  T

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