View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_high_4 (Length: 502)
Name: NF5329_high_4
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 219779 - 219307
Alignment:
| Q |
19 |
acaaactcctacacatttaatattccttaaaatcaaatttcatctcaataagatccaatgtaattgcttatcagaaaattggaaagtctagattttaaca |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219779 |
acaaactcctacacatttaatattcctcaaaatcaaatttcatctcaataagatccaatgtaattgcttatcagaaaattggaaagtctagattttaaca |
219680 |
T |
|
| Q |
119 |
ttgaaatttgagctgtctaatctcgatccaatgactgcctgcctacatactgactactgctcggatgtcggggaatatcaattgtgacaaactaaattcc |
218 |
Q |
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| T |
219679 |
ttgaaatttgagctgtctaatctcgatccaatgactgcctgcctacataccgactactgctcggatgtcggggaatatcaattgtgacaaactaaattcc |
219580 |
T |
|
| Q |
219 |
aataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219579 |
aataatactatatatagctaaaagttaaaacttgaaagtaacaatgaattaatattttaaaatgcaaaccttgtagacatatgggcatccagggtaatca |
219480 |
T |
|
| Q |
319 |
aaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219479 |
aaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataagcataagggtcataaaacc |
219380 |
T |
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| Q |
419 |
cttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatg |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219379 |
cttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatg |
219307 |
T |
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Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 301 - 491
Target Start/End: Original strand, 31651709 - 31651899
Alignment:
| Q |
301 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
400 |
Q |
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|||||||| || |||||||| |||||||||| || ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31651709 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
31651808 |
T |
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| Q |
401 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatg |
491 |
Q |
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| T |
31651809 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatg |
31651899 |
T |
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