View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_high_5 (Length: 491)
Name: NF5329_high_5
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 30 - 474
Target Start/End: Complemental strand, 1197354 - 1196910
Alignment:
| Q |
30 |
aatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaact |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197354 |
aatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaact |
1197255 |
T |
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| Q |
130 |
catcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197254 |
catcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaac |
1197155 |
T |
|
| Q |
230 |
atcatcaaacaacaatggttctgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcat |
329 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197154 |
atcatcaaacaacaatggttctgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcat |
1197055 |
T |
|
| Q |
330 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
429 |
Q |
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| T |
1197054 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
1196955 |
T |
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| Q |
430 |
ttttgaagatggttgaagatcatggaaagaataaggacaagtttt |
474 |
Q |
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| T |
1196954 |
ttttgaagatggttgaagatcatggaaagaataaggacaagtttt |
1196910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 33 - 466
Target Start/End: Original strand, 7289231 - 7289664
Alignment:
| Q |
33 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaactcat |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| | |||||||| ||||| || |
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| T |
7289231 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttagacttcaacaaatcctta-gaaatgaaaaaaaatagaaaacttat |
7289329 |
T |
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| Q |
133 |
caaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatc |
232 |
Q |
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| T |
7289330 |
-acaaattaaa-ccaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaagaacactttctctatctgaacgtgaaggaggaataacatc |
7289427 |
T |
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| Q |
233 |
atcaaacaacaatggttctgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcatacca---actgaatatttgggtcat |
329 |
Q |
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|||||| |||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
7289428 |
atcaaagaacaatggttatgtcctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgtgtcat |
7289527 |
T |
|
| Q |
330 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |
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| T |
7289528 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttgagtgta |
7289627 |
T |
|
| Q |
430 |
ttttgaagatggttgaagatcatggaaagaataagga |
466 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7289628 |
ttttgaagatggttgaagatcatggaaagaataagga |
7289664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 268 - 447
Target Start/End: Original strand, 50471139 - 50471318
Alignment:
| Q |
268 |
tagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaaga |
367 |
Q |
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|||| ||||||||||| | ||| ||||| ||||| | |||||||| || ||||||| ||||||||| ||||| || | | ||||||||||||||||| |
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| T |
50471139 |
tagccgtttgtgttggtgtagaccttaacaggtttgttataccaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaaga |
50471238 |
T |
|
| Q |
368 |
atttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaag |
447 |
Q |
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|||||||||| ||||| ||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
50471239 |
atttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaag |
50471318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 50470930 - 50470991
Alignment:
| Q |
56 |
aaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaa |
117 |
Q |
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||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50470930 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatccttaagaaatggagaa |
50470991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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