View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_high_6 (Length: 474)
Name: NF5329_high_6
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 33 - 452
Target Start/End: Complemental strand, 38003106 - 38002688
Alignment:
| Q |
33 |
aatcagtaaaaaggataagcctagaaatgtcgagtaagaaaggctcaagagtcgtagtgtgggttgaagtgccacaaacaatctaaataataacatgagc |
132 |
Q |
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| T |
38003106 |
aatcagtaaaatgtataaaccaagaaatgtcgagtaagaaaggctcaagagtcatagtgttggttgaagcgccacaaacaatctaaataataacatgag- |
38003008 |
T |
|
| Q |
133 |
aaagaatcataattcacgataagagaagtaatacattgatcacatgcaagcttaataccgaattaa----agacccaaaaagctcagtaaaaatagcaat |
228 |
Q |
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| T |
38003007 |
----aatcataatccacgataagagaagtaatacattgatcacatgcaagcttaataccgaattaattaaagaccccaaaagctcagtaaaaatagcaat |
38002912 |
T |
|
| Q |
229 |
gaaggttccaatatattacaatggaatcatttgatgaagctgtcaaatgaatcgcagatgaagccaccgtagaacgaggagataagcgaatgatgatatt |
328 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| | ||||||||||| |||||||||||||||||| |
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| T |
38002911 |
gaaggttccaatatattacaatggaatcctttgatgaagctgtcaaatgaatctcagatgaagtcactgcagaacgaggagctaagcgaatgatgatatt |
38002812 |
T |
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| Q |
329 |
acgagagtcatcaacatttaatttatagtttgaaggaggggggagggtgccaatcaatatgaatttaaattttgatgttggtggaatataatggaatact |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38002811 |
acgagagtcatcaacatttaatttatagtttgaaggaggggggagggtgccaatcaatatgaatttaaattttgatgttggtggaatataatggaatact |
38002712 |
T |
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| Q |
429 |
atgggatgtgtcttgtatagtaag |
452 |
Q |
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| T |
38002711 |
atgggatgtgtcttgtatagtaag |
38002688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 462
Target Start/End: Original strand, 36275938 - 36276057
Alignment:
| Q |
342 |
acatttaatttatagtttgaaggaggggggagggtgccaatcaatatgaatttaaattttgatgttggtggaatataatggaatactatgggatgtgtct |
441 |
Q |
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||||||||||||||| |||||||||| |||||||||| ||||||||| | |||||||||||| || || |||| | |||||| || ||||||| |
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| T |
36275938 |
acatttaatttatagaaagaaggaggggc-agggtgccaaacaatatgaaactcaattttgatgttagtagagtatatagaaatactgtgaattgtgtct |
36276036 |
T |
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| Q |
442 |
tgtatagtaagatgaaccata |
462 |
Q |
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|| ||| ||||||| |||||| |
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| T |
36276037 |
tgcataataagatggaccata |
36276057 |
T |
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