View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_high_8 (Length: 460)
Name: NF5329_high_8
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 34204995 - 34205437
Alignment:
| Q |
16 |
caatatctatgcatcactactttctttctcttctgaggcttcttgaaacttttcttgagcattagacattcaagcttaattagttctagcttattgcatt |
115 |
Q |
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| T |
34204995 |
caatatctatgcatcactactttctttctcttctgaggtttcttgaaacttttcttgagcattagacattcaagcttaattagttctagcttattgcact |
34205094 |
T |
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| Q |
116 |
catactattataactggttgaaaagtcttcttgcctttacctttctcacgagcatcctttgtagtttcttaaagatgaaggattaatttgtagtttcttt |
215 |
Q |
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| T |
34205095 |
catactattataactggttgaaaagtcttcttgcctttacctttctcacgagcatcctttgtagtttcttaaagatgaaggattaatttgtagtttcttt |
34205194 |
T |
|
| Q |
216 |
aatatgaagggtatgtcatatctttatctttacaaatagagtcataattttcatcactctctttttaaaattgagtccttcccttgatatgattcttctt |
315 |
Q |
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| T |
34205195 |
aatatgaagggtatgtcatatctttatctttacaaatagagtcataattttcatcactctctttttaaaattgagtccttcccttgatatgattcttcat |
34205294 |
T |
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| Q |
316 |
gagcaattttcaatggattccaaaattcttgacttgaggagcatcctgctaccttttcaagttattaatgatggatttaaatataattgtagcaataata |
415 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34205295 |
gagcaattttcaatggattccaaaattcttgagttgaggagcatcctgctactttttcaagttattaatgatggatttaaatataattgtagcaataata |
34205394 |
T |
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| Q |
416 |
gatacaaattatagcatatttgtgtaaaagatagataagaatt |
458 |
Q |
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| T |
34205395 |
gatacaaattatagcatatttgtataaaagatagataagaatt |
34205437 |
T |
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