View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329_low_1 (Length: 563)

Name: NF5329_low_1
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329_low_1
NF5329_low_1
[»] chr1 (5 HSPs)
chr1 (395-485)||(4240307-4240397)
chr1 (150-265)||(4239902-4240016)
chr1 (16-114)||(4239743-4239838)
chr1 (332-384)||(4240083-4240135)
chr1 (519-554)||(4240433-4240468)
[»] chr3 (5 HSPs)
chr3 (221-265)||(19923304-19923348)
chr3 (221-265)||(19939121-19939165)
chr3 (400-442)||(19923489-19923531)
chr3 (69-114)||(19923107-19923152)
chr3 (81-114)||(19938788-19938821)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 395 - 485
Target Start/End: Original strand, 4240307 - 4240397
Alignment:
Q  395 ctttctttcattcaaacacacagtttagtataagtgtcatgataaaaagagaaaaaagcaaagtatggagaatatattggtaataagctat 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240307 ctttctttcattcaaacacacagtttagtataagtgtcatgataaaaagagaaaaaagcaaagtatggagaatatattggtaataagctat 4240397  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 150 - 265
Target Start/End: Original strand, 4239902 - 4240016
Alignment:
Q  150 atacacatcaaattaatcaattatattatatgatttnnnnnnntatatatagaagagaaaaggcatacttgtacttgtatagcttaaaaaatagattaac 249  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239902 atacacatcaaattaatcaattatattatatgatttaaaaaaa-atatatagaagagaaaaggcatacttgtacttgtatagcttaaaaaatagattaac 4240000  T
Q  250 aatcagatcataggcc 265  Q
    ||||||||||||||||    
T  4240001 aatcagatcataggcc 4240016  T

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Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 4239743 - 4239838
Alignment:
Q  16 gatgatccatcatgatgaaatgccagcttattatgatcctaaagagatcaaaacaaaactatacacattagattttaattaagaattttcatttatttg 114  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239743 gatgatccatcatgatgaaatgccagcttat---gatcctaaagagatcaaaacaaaactatacacattagattttaattaagaattttcatttatttg 4239838  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 4240083 - 4240135
Alignment:
Q  332 aacatggattatagcttgctctgtcagtgtctgttttggtgttttctggtata 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4240083 aacatggattatagcttgctctgtcagtgtctgttttggtgttttctggtata 4240135  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 519 - 554
Target Start/End: Original strand, 4240433 - 4240468
Alignment:
Q  519 agggatcatatatgatcttacctgatgatgatgatg 554  Q
    ||||||||||||||||||||||||||||||||||||    
T  4240433 agggatcatatatgatcttacctgatgatgatgatg 4240468  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 19923304 - 19923348
Alignment:
Q  221 tacttgtatagcttaaaaaatagattaacaatcagatcataggcc 265  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  19923304 tacttgtatatcttaaaaaatagattaataatcagatcataggcc 19923348  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 19939121 - 19939165
Alignment:
Q  221 tacttgtatagcttaaaaaatagattaacaatcagatcataggcc 265  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  19939121 tacttgtatatcataaaaaatagattaacaatcagatcataggcc 19939165  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 442
Target Start/End: Original strand, 19923489 - 19923531
Alignment:
Q  400 tttcattcaaacacacagtttagtataagtgtcatgataaaaa 442  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||    
T  19923489 tttcattcaaacaaacagtttagtaaaagtgtcatcataaaaa 19923531  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 19923107 - 19923152
Alignment:
Q  69 caaaactatacacattagattttaattaagaattttcatttatttg 114  Q
    ||||||||||  ||||||| ||||||||| ||||||||||||||||    
T  19923107 caaaactatatgcattagactttaattaacaattttcatttatttg 19923152  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 19938788 - 19938821
Alignment:
Q  81 cattagattttaattaagaattttcatttatttg 114  Q
    ||||||| ||||||||||||||||||||||||||    
T  19938788 cattagactttaattaagaattttcatttatttg 19938821  T

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