View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_10 (Length: 436)
Name: NF5329_low_10
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 6189977 - 6189574
Alignment:
| Q |
16 |
attacttcaagtggaaggagtttaggatggnnnnnnnnnngttttaagaattctaataccctgtcttttatatgtgacaaatttatctattttgttttta |
115 |
Q |
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| T |
6189977 |
attacttcaagtggaaggagtttaggatggaaaaaaaaaagttttaagaattctaataccctgtcttttatatgtgacaaatttatctattttgttttta |
6189878 |
T |
|
| Q |
116 |
cctttgtatctaaatcttttagcatggaaaagttacattagattagacaccaactaatttgattaaagagaaaaagacccattaagaaacaaaattctgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6189877 |
cctttgtatctaaatcttttagcatggaaaagttacattagattagacaccaactaatttgattaaagagaaaaagacccattaagaaacaaaattctgc |
6189778 |
T |
|
| Q |
216 |
taatctaatgcaaattccaattttgagatcttattttaaagatatgtgtgccacacaatctaatgtcaccatcttggaatttggcataaccatatttatt |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6189777 |
taatctaatgcaaattccaattttgagattttattttaaagatatgtgtgccacacaatctaatgtcaccatcttggaatttggcataaccatatttatt |
6189678 |
T |
|
| Q |
316 |
gatttaatcttaattaaatttaagggtgtttgccaagcagcagtaaatgaac-nnnnnnnttgtaggctgcacaaattatggttttgtctttttcgtgcc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
6189677 |
gatttaatcttaattaaatttaagggtgtttgccaagcagcagtaaatgaacaaaaaaaattgtaggctgcacaaattatggatttgtctttttcgtgcc |
6189578 |
T |
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| Q |
415 |
atgt |
418 |
Q |
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|||| |
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| T |
6189577 |
atgt |
6189574 |
T |
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