View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5329_low_11 (Length: 436)
Name: NF5329_low_11
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 32063393 - 32062979
Alignment:
| Q |
11 |
atgaaatgtctccttgtataagattttgctgtatgnnnnnnnccataatcaaaatatcattataagatttttt--ctagttactataatcgttaattaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
32063393 |
atgaaatgtctccttgtataagattttgctgtatgtttttttccataatcaaaatatcattataagattttttttctagttactataatagttaattaat |
32063294 |
T |
|
| Q |
109 |
atgattcttttgatatgctttttatcctctaattgagtttcacagggtaaaaagtcttcactacaaatcaaatcattctcataggtttcatgtttgtttc |
208 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32063293 |
atgattcttttgatatgttttctatcctctaattgagtttcacagggtaaaaagtcttcactacaaatcaaatcattctcataggtttcatgtttgtttc |
32063194 |
T |
|
| Q |
209 |
cctgcttgttacggctggattaacctgcgctaggcatccccccttttatcaataaaattccaacatacccatgnnnnnnncaacttccaacagcattgct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
32063193 |
cctgcttgttacggctggattaacctgcgctaggcattcccccttttatcaataaaattccaacatacccatgtttttttcaacttccaacagcattgct |
32063094 |
T |
|
| Q |
309 |
cccacttggtttgcatnnnnnnnnnc----atctgaaagctgaaacacttggtttgcataatccaacaacattgctctcacttggaacatgaaatcgaaa |
404 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
32063093 |
cccacttggtttgcataaaaaaacgcctgaaactgaaagctgaaacacttggtttccataatccaacaacattgctctcacttggaagatgaaatggaaa |
32062994 |
T |
|
| Q |
405 |
gctgaaactgaattg |
419 |
Q |
| |
|
||||||||||||||| |
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|
| T |
32062993 |
gctgaaactgaattg |
32062979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 43608554 - 43608138
Alignment:
| Q |
11 |
atgaaatgtctccttgtataagattttgctgtatgnnnnnnnccataatcaaaatatcattataagattttttctagttactataatcgttaattaatat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43608554 |
atgaaatgtctccttgtataagattttgctgtatgtttttttccataatcaaaatatcattataagattttttctagttactataatagttaattaatat |
43608455 |
T |
|
| Q |
111 |
gattcttttgatatgctttttatcctctaattgagtttcacagggtaaaaagtcttcactacaaatcaaatcattctcataggtttcatgtttgtttccc |
210 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
43608454 |
gattcttttgatatgctttctatcctctaattgagtttcacagggtaaaaagtcttcactacaaatcaaatcattctcataggtttcatttttgtttccc |
43608355 |
T |
|
| Q |
211 |
tgcttgttacggctggattaacctgcgctaggcatccccccttttatcaataaaattccaacatacccatg-nnnnnnncaacttccaacagcattgctc |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
43608354 |
tgcttgttatggctggattaacctgcgctaggcatc-ccccttttatcaataaaattccaacatacccatgttttttttcaacttccaacaacattgctc |
43608256 |
T |
|
| Q |
310 |
ccacttggtttgcat--------nnnnnnnnncatctgaaagctgaaacacttggtttgcataatccaacaacattgctctcacttggaacatgaaatcg |
401 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43608255 |
tcacttggtttgcataaaaaaaaaaacacctgaaactgaaagctgaaacacttggtttgcataatccaacaacattgctctcacttggaagatgaaatcg |
43608156 |
T |
|
| Q |
402 |
aaagctgaaactgaattg |
419 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
43608155 |
aaagttgaaactgaattg |
43608138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 1078869 - 1079288
Alignment:
| Q |
11 |
atgaaatgtctccttgtataagattttgctgtatgnnnnnnnccataatcaaaatatcattataagatttt-ttctagttactataatcgttaattaata |
109 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
1078869 |
atgaaatgtctccttgtgtaagattttgttgtatgcttttttccataatcaaaatatcattataagatttttttctagttactataatagttaattaata |
1078968 |
T |
|
| Q |
110 |
tgattcttttgatatgctttttatcctctaattgagtttcacagggtaaaaagtcttcactacaaatcaaatcattctcataggtttcatgtttgtttcc |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1078969 |
tgattcttttgatatgctttctatcctctaattgagtttcacagggtaaaaagccttcactacaaatcaaatcattctcataggtttcatgtttgttttc |
1079068 |
T |
|
| Q |
210 |
ctgcttgttacggctggattaacctgcgctaggcatccccccttttatcaataaaattccaacatacccatgnnnnnnncaacttccaacagcattgctc |
309 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
1079069 |
ctgcttgttacggctcgattaacctgcgctaggcatccccccttttatcaataaaattccaacatacccatgtttttttcaacttccaacagtattgctc |
1079168 |
T |
|
| Q |
310 |
ccac----ttggtttgcatnnnnnnnnnc------atctgaaagctgaaacacttggtttgcataatccaacaacattgctctcacttggaacatgaaat |
399 |
Q |
| |
|
||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1079169 |
tcacttaattggtttgcataaaaaaaaacacctgaaactgaaagctgaaacacttggtttgcataatccaacaacattgctctcacttggaagatgaaat |
1079268 |
T |
|
| Q |
400 |
cgaaagctgaaactgaattg |
419 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1079269 |
cgaaagctgaaactgaattg |
1079288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 33767664 - 33767416
Alignment:
| Q |
9 |
caatgaaatgtctccttgtat-aagattttgctgtatgnnnnnnncca-taatcaaaatatcattataagattttttctagttactataatcgttaatta |
106 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| || |||||||||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
33767664 |
caatgaaatgtctccttgtatcaaggttttgctgtatgatttttttcaataatcaaaatatcattataagattttctctagttagtataataattaatta |
33767565 |
T |
|
| Q |
107 |
atatgattcttttgatatgctttttatcctctaattgagtttcacagggtaaaaagtcttcactacaaatcaaatcattctcataggtttcatgtttgtt |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |
|
|
| T |
33767564 |
atatgattcttttgatatgctttctatcctctaattgagttttaaagggtaaaaagtcttcattaaaaatcaaatcattttcataggtttcatgtttgtg |
33767465 |
T |
|
| Q |
207 |
tccctgcttgttacggctggattaacctgcgctaggcatcccccctttt |
255 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||| ||||||| |||| |
|
|
| T |
33767464 |
tccctgcttgttacggttggattaagctgcactagatatcccccttttt |
33767416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 6973364 - 6973525
Alignment:
| Q |
11 |
atgaaatgtctccttgtataagattttgctgtatgnnnnnnnccataatcaaaatatcattataagattttttctagttactataatcgttaattaatat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
6973364 |
atgaaatgtctccttgtataagattttgctgtatgtttttttccataatcaaaatatcattataagattttttctagttactataataattaattaacat |
6973463 |
T |
|
| Q |
111 |
gattcttttgatatgctttttatcctctaattgagtttcacagggtaaaaagtcttcactac |
172 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6973464 |
gattcttttgatatgctttctatccactaattgagtttcacaggataaaaagtcttcactac |
6973525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 60 - 419
Target Start/End: Complemental strand, 24142183 - 24141818
Alignment:
| Q |
60 |
caaaatatcattataagattttttctagttactataatcgttaattaatatgattcttttgatatgctttttatcctctaattgagtttcacagggtaaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24142183 |
caaaatatcattataagattttttctagttactataatagttaattaatatgattcttttgatatgctttctatcctctaattgagtttcacagggtaaa |
24142084 |
T |
|
| Q |
160 |
aagtcttcactacaaatcaaatcattctcataggtttcatgtttgtttccctgcttgttacggctggattaacctgcgctaggcatccccccttttatca |
259 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24142083 |
aagtcttcactacaaatcaaatcattctaataggtttcatgtttgtttccctgcttgttacggctggattaacttgcgctaggcatccccccttttatca |
24141984 |
T |
|
| Q |
260 |
ataaaattccaacatacccatg-nnnnnnncaacttccaacagcattgctcccacttggtttgcat-----nnnnnnnnncatctgaaagctgaaacact |
353 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| | ||||||||||||||| | |
|
|
| T |
24141983 |
ataaaattccaacatacccatgttttttttcaacttccaacaacattgctctcacttggtttgcataaaaaaaacacctgaaactgaaagctgaaacatt |
24141884 |
T |
|
| Q |
354 |
tggtttgcataatccaacaacattgctctcacttggaacatgaaatcgaaagctgaaactgaattg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24141883 |
tggtttgcataatccaacaacattgctctcacttggaagatgaaatcgaaagctgaaactgaattg |
24141818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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