View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_13 (Length: 417)
Name: NF5329_low_13
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 41129869 - 41130249
Alignment:
| Q |
17 |
agtaccaacaattgcaaaattggaagttctataggatgaggcatcacgaggaagattaagtgtttgctttctctaaatttgaatgttagatttatgcata |
116 |
Q |
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| T |
41129869 |
agtaccaacaattgcaaaattggaagttctataggatgaggcatcacgaggaagattaagtgtttgctttctctaaatttgaatgttagatttatgcata |
41129968 |
T |
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| Q |
117 |
tttacaaggaagcaaatagatgtgttagcaatatgatttgggtggtagatgcaaactatctatattttcggtcgacgcctgttgaggtgtatcatgttct |
216 |
Q |
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| T |
41129969 |
tttacaaggaagcaaatagatgtgttagcaatatgatttgggtggtagatgcaaactatctatattttcggtcgacgcctgttgaggtgtatcatgttct |
41130068 |
T |
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| Q |
217 |
agttgatgattttttaggtgtctcgttacctcacctaacaggagggccgacccaacgtatattcagacct-aagtgaaaatttagatgaagccttttcaa |
315 |
Q |
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| T |
41130069 |
agttgatgatttttgaggtgtctcgttacctcacctaacagcagggccgactcaacgtatattcagacctaaagtgaaaatttagatgaagccttttcaa |
41130168 |
T |
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| Q |
316 |
aataataatagtttatttttatcgagttatttaattctattcttgaggcaataatgaagatgaagatgaattacaataact |
396 |
Q |
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| T |
41130169 |
aataataatagtttatttttatcgagttatttaattctattcttgaggcaataatgaagatgaagatgaattacaataact |
41130249 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 1310745 - 1310807
Alignment:
| Q |
339 |
gagttatttaattctatt-cttgaggcaataatgaagatgaagatgaattacaataactataa |
400 |
Q |
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| T |
1310745 |
gagttatttaattttatttcttgagccaataatgatggtgaagataaattacaataactataa |
1310807 |
T |
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