View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_14 (Length: 414)
Name: NF5329_low_14
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 119 - 334
Target Start/End: Complemental strand, 44476374 - 44476167
Alignment:
| Q |
119 |
agaacagagatgatactaaaatttgttatattaaaaatattcttctagttctatgcaattaactaaaattagtgtccatatgtgtagtgtaagagacaaa |
218 |
Q |
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| T |
44476374 |
agaacagagatgatactaaaatttgttatattaaaaatattct---agttctatgcaattaactaaaattagtgtccatatgtgtagtttaagagacaaa |
44476278 |
T |
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| Q |
219 |
tattaattaatctcataattaaaaataagatattaatttaacttgatcattcattttttataaagaaatatgtttannnnnnnagttattagctggtaaa |
318 |
Q |
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| T |
44476277 |
tattaat----ctcataattaaaaataagatattaatttaacttgatcattcattttttataaagaaatatgttta-tttcttagttattagctggtaaa |
44476183 |
T |
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| Q |
319 |
aacaaacagcaattaa |
334 |
Q |
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|||||||||||||||| |
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| T |
44476182 |
aacaaacagcaattaa |
44476167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 44476629 - 44476521
Alignment:
| Q |
13 |
aatatccaaaactcatttctgactaatgtatggtccgaccaannnnnnnngttaaacaagtataattagttgtattttcttgatgaaggtatagcacgat |
112 |
Q |
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| T |
44476629 |
aatatccaaaactcgtttctgactaatgtatggtccgaccaattttttttgttaaacaagtataattagttgtatttttttgatgaaggtatagcacgat |
44476530 |
T |
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| Q |
113 |
acgagaaga |
121 |
Q |
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| T |
44476529 |
gtgagaaga |
44476521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 44471777 - 44471698
Alignment:
| Q |
130 |
gatactaaaatttgttatattaaaaatattcttctagttctatgcaattaactaaaattagtgtccatatgtgtagtgtaagagac |
215 |
Q |
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| T |
44471777 |
gatactagaatttgttatattaaaa----tattatagttctatgcaattaactaaaattagtctc--tatatgtagtgtaagagac |
44471698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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