View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_15 (Length: 412)
Name: NF5329_low_15
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 3545905 - 3546286
Alignment:
| Q |
18 |
acactattgttgaatggttattgaatacaagttacaacttataacaccattctttactgaaaaacataatctaac---------------tgaaaaacat |
102 |
Q |
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| T |
3545905 |
acactattgttgaatggttattgaatacaagttacaacttatatcaccattctttactgaaaaacataatctaaccaaaaataatctaactgaaaaacat |
3546004 |
T |
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| Q |
103 |
tatgccacttaatatgaaagcacacttctgtcagagtggcaacagagtaaatctactttgctgttatggatccaaaccctcaatgacagcatttactaat |
202 |
Q |
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| T |
3546005 |
tatgccacttaatatgaaagcacacttctgtcagagtggcaacagagtaaatctgcttt------------ccaaaccctcaatgacagcatttactaat |
3546092 |
T |
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| Q |
203 |
tacctagctccatataatctaagatttacataatcaaagatttatatatttggtttacatatatgaattctcatcaaaggatggattctcttttcatgta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3546093 |
tacctagctccatataatctaagatttacataatcaaagatttatatatttggtttacatatatgaattctcatcaaaggatggattctcttttcatgta |
3546192 |
T |
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| Q |
303 |
aacaagatcaagcctcatattatggttaaccaatcaaactgatacaggacatggttgtgggggagaggggcagatataaattatgtacatcaac |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3546193 |
aacaagatcaagcctcatattatggttaaccaatcaaactgatacaggacatggttgtgggggagaggggcagatataaattatgtacatcaac |
3546286 |
T |
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