View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_16 (Length: 403)
Name: NF5329_low_16
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 41 - 390
Target Start/End: Original strand, 15801300 - 15801652
Alignment:
| Q |
41 |
atcctgtatttgtattggaagtttgtcatgaaaaataatattttcattttgaagtttcaggcgacaaga---gtcacttaaccactaggaaagtttatcg |
137 |
Q |
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| T |
15801300 |
atcctgtatttgtattagaagtttgtcatgaaaaataatattttcattttgaagtttcaggcgacaagaagagtcacttaaccactaggaaagtttatcg |
15801399 |
T |
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| Q |
138 |
cgattgcagatacctacaaaatcttcattgagatctctgcaatcaagatacaaggtttataaagaaagtcctaattgaaatcatcaaatatgttttctta |
237 |
Q |
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| T |
15801400 |
cgattgcagatacctacaaaatcttcattgagatctctgcaatcaagatacaaggtttataaagaaagtcctaattgaaatcatcaaatatgttttctta |
15801499 |
T |
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| Q |
238 |
atttatcttttgtgatttaacctgccttaatttatctgcaaccattaatgttacctggattcggcataggaggagattctgtttgcagttggtagaacat |
337 |
Q |
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| T |
15801500 |
atttatcttttgtgatttaacctgccttaatttatctgcaaccattaatgttacctggattcggcataggaggagattctgtttgcagttggtagaacat |
15801599 |
T |
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| Q |
338 |
ataatcatcaattttaagcccacagctaggagacataacggcccacgctacct |
390 |
Q |
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| T |
15801600 |
ataatcatcaattttaagcccacagctaggagacataacggcccacgctacct |
15801652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 15793389 - 15793449
Alignment:
| Q |
167 |
gagatctctgcaatcaagatacaaggtttataaagaaagtcctaattgaaatcatcaaata |
227 |
Q |
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| T |
15793389 |
gagatctctacgatcaagagacaagctttataaagcaagtctttattgaaatcatcaaata |
15793449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 15801024 - 15801053
Alignment:
| Q |
14 |
caacagtatcatacatgaaaaagctgcatc |
43 |
Q |
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| T |
15801024 |
caacagtatcatacatgaaaaagctgcatc |
15801053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 15793536 - 15793639
Alignment:
| Q |
128 |
aagtttatcgcgattgcagatacctacaaaatcttcattgagatctctgcaatcaagatacaaggtttataaagaaagtcctaattgaaatcatcaaata |
227 |
Q |
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| T |
15793536 |
aagttcatcgcaattgcatagacctgaaaaatcttggttgagatctctacgattaagagacaagctttataaag-aagtcttcattgcaatcatcaaata |
15793634 |
T |
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| Q |
228 |
tgttt |
232 |
Q |
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|||| |
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| T |
15793635 |
agttt |
15793639 |
T |
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