View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_18 (Length: 375)
Name: NF5329_low_18
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 34143804 - 34143460
Alignment:
| Q |
15 |
catcagcactcagcatagtaatcaatgtttgaattattagtttagtggtagcaggaaacatggaagaggtggatcaagctttcattcaaaacccataaaa |
114 |
Q |
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| T |
34143804 |
catcagcactcagcatagtaatcaatgtttgaattattagtttagtggtagcaggaaacatggaagaggtggatcaagctttcattcaaaacccagaaaa |
34143705 |
T |
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| Q |
115 |
cagaccaaaactctccatcacccaagctgaaggcattcccgtaatcaacctctccccaataatccacaacacagttcaagactcctctgccatacaagcc |
214 |
Q |
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| T |
34143704 |
cagaccaaaactctccatcacccaagctgaaggcattcccgtaatcaacctctccccaataatccacaacacagttcaagactcctctgccatacaagcc |
34143605 |
T |
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| Q |
215 |
ttagtcaaagagatatcaagtgcttgcaaggaatggggtttcttccaagttacaaatcatggagtccctcccactctaaggctcaaaatggaagaagctt |
314 |
Q |
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| T |
34143604 |
ttagtcaaagagatatcaagtgcttgcaaggaatggggtttcttccaagttacaaatcatggtgtccctcccactctaaggctcaaaatggaagaagctt |
34143505 |
T |
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| Q |
315 |
ctaagatgttcttcgcacagagcctggaggataagaagaagatta |
359 |
Q |
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| T |
34143504 |
ctaagatgttcttcgcacagagcctggaggataagaagaagatta |
34143460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 34137441 - 34137390
Alignment:
| Q |
232 |
aagtgcttgcaaggaatggggtttcttccaagttacaaatcatggagtccct |
283 |
Q |
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|||||| ||||| || ||||||||||||||||| ||||| |||||||||||| |
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| T |
34137441 |
aagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtccct |
34137390 |
T |
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