View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329_low_25 (Length: 291)

Name: NF5329_low_25
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329_low_25
NF5329_low_25
[»] chr1 (1 HSPs)
chr1 (14-275)||(13537182-13537456)
[»] chr2 (4 HSPs)
chr2 (14-275)||(3813015-3813297)
chr2 (168-275)||(42946148-42946255)
chr2 (14-116)||(42946308-42946410)
chr2 (117-156)||(42946287-42946326)
[»] chr5 (3 HSPs)
chr5 (168-275)||(42311110-42311217)
chr5 (14-116)||(42310956-42311057)
chr5 (125-156)||(42311047-42311078)
[»] scaffold1052 (2 HSPs)
scaffold1052 (68-116)||(1205-1253)
scaffold1052 (68-116)||(1421-1469)
[»] chr3 (1 HSPs)
chr3 (68-116)||(32356736-32356784)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 13537182 - 13537456
Alignment:
Q  14 ccattatcttcaacctctcaacatgcaaacaatccagaaaagnnnnnnnnnctctcaatactttgtaacacttataacaatttcacaaaaattattcata 113  Q
    ||||||| |||||||||||||||||||||||  |||||||||         |||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  13537182 ccattattttcaacctctcaacatgcaaacatcccagaaaagaaaaaaaaactctcaatactttgtaacacttgtaacaatttcacaaaaactattcata 13537281  T
Q  114 actacaaaaactattcataacttctccaattcaaaattatgttcaa-----------aatt--atcttcaatatcaaatgtaactacccacacctctaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||           ||||  ||| | ||  |||||||||||||||||||||||||||    
T  13537282 actacaaaaactattcataacttctccaattcaaaattatgttcaactacagaccataattttatcataaagttcaaatgtaactacccacacctctaca 13537381  T
Q  201 acccatctccccccttgtcatcaccacttcactggaccttcctacccatttcccaggaaatcaagtaggtgtcat 275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13537382 acccatctccctccttgtcatcaccacttcactggaccttcctacccatttcctaggaaatcaagtaggtgtcat 13537456  T

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Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 3813015 - 3813297
Alignment:
Q  14 ccattatcttcaacctctcaacatgcaaacaatccagaaaagnnnnnnnnn-ctctcaatactttgtaacacttataacaatttcacaaaaattattcat 112  Q
    |||||||||||||||||||||||||||||||| |||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3813015 ccattatcttcaacctctcaacatgcaaacaacccagaaaagaaaaaaaaaactctcaatactttgtaacacttataacaatttcacaaaaattattcat 3813114  T
Q  113 aactacaaaaactattcataacttctccaattcaaaattatgttcaa-----------aattatct---------tcaatatcaaatgtaactacccaca 192  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||           |||| | |         |||||||||||||||||||||| ||    
T  3813115 aactacaaaaactattcaaaacttctccaattcaaaattatgttcaactacagaccataattttatcataaagtctcaatatcaaatgtaactacccgca 3813214  T
Q  193 cctctacaacccatctccccccttgtcatcaccacttcactggaccttcctacccatttcccaggaaatcaagtaggtgtcat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3813215 cctctacaacccatctccccccttgtcatcaccacttcactggaccttcctacccatttcctaggaaatcaagtaggtgtcat 3813297  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 42946255 - 42946148
Alignment:
Q  168 tcaatatcaaatgtaactacccacacctctacaacccatctccccccttgtcatcaccacttcactggaccttcctacccatttcccaggaaatcaagta 267  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42946255 tcaatatcaaatgtaactacctacacctctacaacctatctccctccttgtcatcaccacttcactggaccttcctacccatttaccaggaaatcaagta 42946156  T
Q  268 ggtgtcat 275  Q
    ||||||||    
T  42946155 ggtgtcat 42946148  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 42946410 - 42946308
Alignment:
Q  14 ccattatcttcaacctctcaacatgcaaacaatccagaaaagnnnnnnnnnctctcaatactttgtaacacttataacaatttcacaaaaattattcata 113  Q
    |||||||||||||||||||||||||||||||| ||| ||||          |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42946410 ccattatcttcaacctctcaacatgcaaacaacccaaaaaaaaaaaaaaaactctcaatactttgtaacacttataacaatttcacaaaaactattcata 42946311  T
Q  114 act 116  Q
    |||    
T  42946310 act 42946308  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 42946326 - 42946287
Alignment:
Q  117 acaaaaactattcataacttctccaattcaaaattatgtt 156  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42946326 acaaaaactattcataacttctccaattcaaaattatgtt 42946287  T

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Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 275
Target Start/End: Original strand, 42311110 - 42311217
Alignment:
Q  168 tcaatatcaaatgtaactacccacacctctacaacccatctccccccttgtcatcaccacttcactggaccttcctacccatttcccaggaaatcaagta 267  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  42311110 tcaatatcaaatgtaactacctacacctctacaacccatctccctccttgtcatcaccacttcaccggaccttcctacccatttaccaggaaatcaagta 42311209  T
Q  268 ggtgtcat 275  Q
    ||||||||    
T  42311210 ggtgtcat 42311217  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 42310956 - 42311057
Alignment:
Q  14 ccattatcttcaacctctcaacatgcaaacaatccagaaaagnnnnnnnnnctctcaatactttgtaacacttataacaatttcacaaaaattattcata 113  Q
    |||||||||||| ||||||||||||||||||| ||| |||||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42310956 ccattatcttcaccctctcaacatgcaaacaacccaaaaaagaaaaaaaa-ctctcaatactttgtaacacttataacaatttcacaaaaattattcata 42311054  T
Q  114 act 116  Q
    |||    
T  42311055 act 42311057  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 156
Target Start/End: Original strand, 42311047 - 42311078
Alignment:
Q  125 tattcataacttctccaattcaaaattatgtt 156  Q
    ||||||||||||||||||||||||||||||||    
T  42311047 tattcataacttctccaattcaaaattatgtt 42311078  T

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Target: scaffold1052 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 1253 - 1205
Alignment:
Q  68 tcaatactttgtaacacttataacaatttcacaaaaattattcataact 116  Q
    |||||||||  |||||||| ||||| ||||||||||| |||||||||||    
T  1253 tcaatacttcataacacttttaacagtttcacaaaaactattcataact 1205  T

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Target: scaffold1052; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 1469 - 1421
Alignment:
Q  68 tcaatactttgtaacacttataacaatttcacaaaaattattcataact 116  Q
    |||||||||  |||||||| ||||| ||||||||||| |||||||||||    
T  1469 tcaatacttcataacacttttaacagtttcacaaaaactattcataact 1421  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 32356784 - 32356736
Alignment:
Q  68 tcaatactttgtaacacttataacaatttcacaaaaattattcataact 116  Q
    |||||||||  |||||||| ||||| ||||||||||| |||||||||||    
T  32356784 tcaatacttcataacacttttaacagtttcacaaaaactattcataact 32356736  T

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