View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_26 (Length: 270)
Name: NF5329_low_26
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 36955547 - 36955278
Alignment:
| Q |
1 |
atatgggaggttgtcatacgatttatttgattcttggagccttagaatgatgagtgttaacattgacagcttttaatactttaaaacctatcattgaggg |
100 |
Q |
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| T |
36955547 |
atatgggaggttgtcatacgatttatttgattcttggagccttagaatgatgagtgttaacattgacagcttttaatactttaaaacctatcattgaggg |
36955448 |
T |
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| Q |
101 |
gcatgtggaaagagtaacgtgattaccagacaattatacatttgcaattatcatagaaatgattgtgctccaattaggtctcctatcattgaatttttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36955447 |
gcatgtggaaagagtaacgtgattaccagacaattatacatttgcaattatcatagaaatgattgtgctccaattaggtctcctatcattgaatttttgg |
36955348 |
T |
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| Q |
201 |
ttattcttgttgatccatatcacattgacaattttaaagaatagctgcaatgatgacaattttaagttga |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36955347 |
ttattcttgttgatccatatcacattgacaattttaaagaatagctgcaatgatgacaattttgagttga |
36955278 |
T |
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