View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329_low_27 (Length: 266)

Name: NF5329_low_27
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329_low_27
NF5329_low_27
[»] chr2 (3 HSPs)
chr2 (23-258)||(3812771-3813006)
chr2 (23-119)||(42946419-42946515)
chr2 (23-119)||(6183065-6183161)
[»] chr5 (1 HSPs)
chr5 (23-119)||(42310851-42310947)
[»] chr1 (3 HSPs)
chr1 (24-119)||(13537078-13537173)
chr1 (128-215)||(17914822-17914909)
chr1 (23-119)||(5101801-5101897)
[»] chr4 (1 HSPs)
chr4 (26-119)||(24472560-24472653)
[»] chr8 (1 HSPs)
chr8 (26-119)||(35886063-35886156)
[»] scaffold1052 (1 HSPs)
scaffold1052 (23-119)||(1516-1612)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 3813006 - 3812771
Alignment:
Q  23 tatagtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgccaaca 122  Q
    |||||||| |||| || ||||||| | ||||||||||||| | ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||    
T  3813006 tatagtgtagagagaccatgataagatcttaaatctaatgattgaaagttatttttgtatggtggaaaactctttcccatttccatcctaaatgccacca 3812907  T
Q  123 ttttttatcattcttatacctactaacttgcttaagtatgttcttgttgatgttggacctattttagattctaagcatatcgttttcatatgccatttct 222  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3812906 ttttttatcattcttatacttactaacttgcttaaatatgttcttgttcatgttggacctattttagattctaagcatatcgttttcatatgccatttct 3812807  T
Q  223 aaaaagtaattatataatgattcccatgatgatgtc 258  Q
    |||||||||||||||||||||||||||||| |||||    
T  3812806 aaaaagtaattatataatgattcccatgattatgtc 3812771  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 42946419 - 42946515
Alignment:
Q  23 tatagtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgcca 119  Q
    |||||| |||||| || ||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  42946419 tatagtatggagagaccatgataagatcttaaatctaatggtcgaaagctatttttgtatggtgggaaactctttcccattcccaccctaaatgcca 42946515  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 6183065 - 6183161
Alignment:
Q  23 tatagtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgcca 119  Q
    ||||||||||||| ||||| |||| | |||||||||||||||| ||| ||||||||  |||||||| || | |||||| |  ||| |||||||||||    
T  6183065 tatagtgtggagagactatcataagatcttaaatctaatggtctaaatctatttttccatggtgggtaactttttcccttacccaccctaaatgcca 6183161  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 42310947 - 42310851
Alignment:
Q  23 tatagtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgcca 119  Q
    |||||| |||||| || ||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  42310947 tatagtatggagagaccatgataagatcttaaatctaatgatcgaaagctatttttgtatggtgggaaactctttcccattcccaccctaaatgcca 42310851  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 13537173 - 13537078
Alignment:
Q  24 atagtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgcca 119  Q
    |||||||||||| |||||||||| | |||||||||||||||  ||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  13537173 atagtgtggagagactatgataagatcttaaatctaatggttcaaagctattttcgtatggtaggaaactctttcccatttccaccctaaatgcca 13537078  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 17914822 - 17914909
Alignment:
Q  128 tatcattcttatacctactaacttgcttaagtatgttcttgttgatgttggacctattttagattctaagcatatcgttttcatatgc 215  Q
    |||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||  | || ||||| |||||||||||||||||||    
T  17914822 tatcattcatatacttactgacttgcttaagtatgttcttgttcatgttggacctacctcaggttctaggcatatcgttttcatatgc 17914909  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 5101801 - 5101897
Alignment:
Q  23 tatagtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgcca 119  Q
    |||||||  |||||||||| |||| | |||||||||||||||| ||| |||||||   |||||||| || ||||| || |  ||| |||||||||||    
T  5101801 tatagtgcagagaaactatcataagatcttaaatctaatggtctaaatctattttcccatggtgggtaactctttaccttacccaccctaaatgcca 5101897  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 24472560 - 24472653
Alignment:
Q  26 agtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgcca 119  Q
    |||||||||| |  ||||||| | |||||||||||||||| ||| |||||||  || ||||||||| ||||||| ||| ||| |||||||||||    
T  24472560 agtgtggagagagcatgataagatcttaaatctaatggtcaaaaactattttcttacggtgggaaactctttcctattcccaccctaaatgcca 24472653  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 35886063 - 35886156
Alignment:
Q  26 agtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgcca 119  Q
    |||||||||| |  ||||||| | |||||||||||||||| ||| |||||||  || ||||||||| ||||||| ||| | | |||||||||||    
T  35886063 agtgtggagagagcatgataagatcttaaatctaatggtcaaaaactattttcttacggtgggaaactctttcctattcctaccctaaatgcca 35886156  T

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Target: scaffold1052 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1052
Description:

Target: scaffold1052; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 1516 - 1612
Alignment:
Q  23 tatagtgtggagaaactatgataaaaacttaaatctaatggtcgaaagctatttttgtatggtgggaaattctttcccatttccatcctaaatgcca 119  Q
    ||||||| ||||| ||||| |||| | |||||||||||||||| ||| |||||||   |||||||| || |||||||| |  ||| |||||||||||    
T  1516 tatagtgcggagagactatcataagatcttaaatctaatggtctaaatctattttccaatggtgggtaactctttcccttacccaccctaaatgcca 1612  T

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