View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_29 (Length: 257)
Name: NF5329_low_29
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 38446670 - 38446431
Alignment:
| Q |
18 |
aaaatcagcagaatcatagaaacatttcttttgttttattactcctctgactggttctgttttctcgtttagatctataacactgtcgtttaaagatgaa |
117 |
Q |
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| T |
38446670 |
aaaatcagcagaatcatagaaacatttcttttgttttattactcctctgaatggttctgttttctcgtttagatctatagcactgtcgtttaaagatgaa |
38446571 |
T |
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| Q |
118 |
actttgtcgaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgagatagatctctatgaaccgttgattcagaagcagatcttagaa |
217 |
Q |
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| T |
38446570 |
actttgtcgaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgagatagatctctatgaaccgttgattcagaagcagatcttagaa |
38446471 |
T |
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| Q |
218 |
gcttagggtttggatcagagtcttccagacccatgagttt |
257 |
Q |
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| T |
38446470 |
gcttagggtttggatcagagtcttccagacccatgagttt |
38446431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 20210436 - 20210338
Alignment:
| Q |
126 |
gaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgagat---agatctctatgaaccgttgattcagaagcagatcttagaagctt |
221 |
Q |
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| T |
20210436 |
gaattgcttaaattggaaatttgtagtgtcaaagaaatgatattgttgagatgttagatctctttgaaccgttgattcagaagcaaatcttagaagctt |
20210338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 2243103 - 2243161
Alignment:
| Q |
22 |
tcagcagaatcatagaaacatttcttttgttttattactcctctgactggttctgtttt |
80 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||| | || |||||||||| |
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| T |
2243103 |
tcagcagaatcatagaaatatttcttttgttttattattcctttctctagttctgtttt |
2243161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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