View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329_low_32 (Length: 245)

Name: NF5329_low_32
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329_low_32
NF5329_low_32
[»] chr1 (1 HSPs)
chr1 (35-234)||(4239550-4239746)
[»] chr3 (3 HSPs)
chr3 (35-129)||(19921719-19921810)
chr3 (49-129)||(19938589-19938669)
chr3 (178-234)||(19938667-19938720)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 4239550 - 4239746
Alignment:
Q  35 agcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttccagctcc 134  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239550 agcagttgtgttgatca---ttttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttccagctcc 4239646  T
Q  135 aaggatgatgataaatttgtgtcacgtgcactgcttgaatccaccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatgatg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4239647 aaggatgatgataaatttgtgtcacgtgcactgcttgaatccaccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatgatg 4239746  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 19921719 - 19921810
Alignment:
Q  35 agcagttgtgttgatcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttcca 129  Q
    |||||||||||||||||   |||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  19921719 agcagttgtgttgatca---ttttattcattaacctcatctttgaagacatccatttctcagacccgtaactattctttttgctgctatcttcca 19921810  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 19938589 - 19938669
Alignment:
Q  49 tcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactgttctttttgctgctatcttcca 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||    
T  19938589 tcatcattttattcatcaacctcatctttgaagatatccatttctcagacccgtgactattctttttattgctatcatcca 19938669  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 19938667 - 19938720
Alignment:
Q  178 ccataactgactcacttgatgaattatagagttgttgttgatgattgcttgatgatg 234  Q
    ||||||||||||||| ||||||||||||||   ||||||| ||||||||||||||||    
T  19938667 ccataactgactcacatgatgaattataga---gttgttggtgattgcttgatgatg 19938720  T

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