View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_36 (Length: 236)
Name: NF5329_low_36
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6094674 - 6094453
Alignment:
| Q |
1 |
tttggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
6094674 |
tttggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgtgaatgta |
6094575 |
T |
|
| Q |
101 |
attaaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatggattgtatgccagatcatatgatacaaatgctacctctctaccatgaagatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094574 |
attaaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatggattgtatgccagatcatatgatacaaatgctacctctctaccatgaagatt |
6094475 |
T |
|
| Q |
201 |
gggagttgtttatgctaaaact |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6094474 |
gggagttgtttatgctaaaact |
6094453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6180863 - 6180711
Alignment:
| Q |
1 |
tttggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatgga |
100 |
Q |
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|||||| ||||||| ||||||||| |||||||||||| | || |||||||||||||| ||||||||| | ||||||||||||| || ||| | ||||| |
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| T |
6180863 |
tttggcattggagaaaaagggaaaatcaattcttattttggatgatgtttggaaatatattgatttgaagaaggtgggaattcatccaaaagtaaatggc |
6180764 |
T |
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| Q |
101 |
attaaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatggattg |
153 |
Q |
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| T |
6180763 |
attaaagtgattctaacaactcgtttgaaacatgtatgtcaccagatggattg |
6180711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6247684 - 6247532
Alignment:
| Q |
1 |
tttggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatgga |
100 |
Q |
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|||||| ||||||| ||||||||| |||||||||||| | || |||||||||||||| ||||||||| | ||||||||||||| || ||| | ||||| |
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| T |
6247684 |
tttggcattggagaaaaagggaaaatcaattcttattttggatgatgtttggaaatatattgatttgaagaaggtgggaattcatccaaaagtaaatggc |
6247585 |
T |
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| Q |
101 |
attaaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatggattg |
153 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
6247584 |
attaaagtgattctaacaactcgtttgaaacatgtatgtcaccagatggattg |
6247532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 6237745 - 6237592
Alignment:
| Q |
1 |
tttggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatgga |
100 |
Q |
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|||||| ||||||| ||||||||| |||||||||||| | || ||||||||||| || ||||||||||| ||||||||||||| || ||| | |||||| |
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| T |
6237745 |
tttggcattggagaaaaagggaaaatcaattcttattttggatgatgtttggaattatattgatttgcagaaggtgggaattcatcaaaaagtgaatggc |
6237646 |
T |
|
| Q |
101 |
attaaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatggattgt |
154 |
Q |
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|||||||||||| | |||||||| ||||||||||| |||||| ||||||||||| |
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| T |
6237645 |
attaaagtgattttgacaactcggttgaaacatgtatgtcaccagatggattgt |
6237592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 6089264 - 6089136
Alignment:
| Q |
44 |
gatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatggaattaaagtgattctaacaactcgtttgaaacatgtgtgtcacg |
143 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| | ||| | |||||| |||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
6089264 |
gatgtttggaaatacattgatttggaaaaggtgggaattcatacaaaggtgaatggtattaaagtaattctgacaactcgtttgaaacttgtgtgtcaac |
6089165 |
T |
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| Q |
144 |
agatggattgtatgccagatcatatgata |
172 |
Q |
| |
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||||||||||||||||| ||||||||||| |
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| T |
6089164 |
agatggattgtatgccaaatcatatgata |
6089136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 6208444 - 6208293
Alignment:
| Q |
3 |
tggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatggaat |
102 |
Q |
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|||| ||||||| ||||||||| |||||||||||| | || ||||||||||| || ||||||||||| ||||||||||||| || ||| | |||||| || |
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| T |
6208444 |
tggcattggagaaaaagggaaaatcaattcttattttggatgatgtttggaattatattgatttgcagaaggtgggaattcatcaaaaagtgaatggcat |
6208345 |
T |
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| Q |
103 |
taaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatggattgt |
154 |
Q |
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| T |
6208344 |
taaagtgattttgacaactcggttgaaacatgtatgtcaccagatggattgt |
6208293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 6106471 - 6106326
Alignment:
| Q |
8 |
ttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatggaattaaag |
107 |
Q |
| |
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||||||| ||||||||| |||||||||||| | || |||||||||||||| ||||||||||| ||||| ||||||| || ||| | |||||| ||||||| |
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| T |
6106471 |
ttggagaaaaagggaaaatcaattcttattttggatgatgtttggaaatatattgatttgcagaaggtaggaattcatccaaaagtgaatggcattaaag |
6106372 |
T |
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| Q |
108 |
tgattctaacaactcgtttgaaacatgtgtgtcacgagatggattg |
153 |
Q |
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||||||||||||| |||||||||||||| ||| || ||||| |||| |
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| T |
6106371 |
tgattctaacaacacgtttgaaacatgtatgtgaccagatgaattg |
6106326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 6234864 - 6234711
Alignment:
| Q |
1 |
tttggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatgga |
100 |
Q |
| |
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|||||| || |||| |||||| || |||||||||||| | || |||||||||||||| ||||||||||| ||||||||||||| || ||| | |||||| |
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| T |
6234864 |
tttggcatttgagaaaaaggggaaatcaattcttattttggatgatgtttggaaatatattgatttgcagaaggtgggaattcatccaaaagtgaatggc |
6234765 |
T |
|
| Q |
101 |
attaaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatggattgt |
154 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||| |||||| ||||||||||| |
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|
| T |
6234764 |
attaaagtgattttgacaactcggttgaaacatgtatgtcaccagatggattgt |
6234711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6213297 - 6213145
Alignment:
| Q |
1 |
tttggcgttggagacaaagggaaattcaattcttattctagacgatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgcgaatgga |
100 |
Q |
| |
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|||||| ||| ||| ||||||||| ||| |||||||| | || |||||||||||||| ||||||||||| ||| ||||||||| || | | | ||||| |
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| T |
6213297 |
tttggcattgaagaaaaagggaaaatcagttcttattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggc |
6213198 |
T |
|
| Q |
101 |
attaaagtgattctaacaactcgtttgaaacatgtgtgtcacgagatggattg |
153 |
Q |
| |
|
|||||||||||| | |||||||||||| ||||||| ||| || |||||||||| |
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|
| T |
6213197 |
attaaagtgattttgacaactcgtttggaacatgtatgttaccagatggattg |
6213145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Complemental strand, 6237506 - 6237476
Alignment:
| Q |
192 |
atgaagattgggagttgtttatgctaaaact |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
6237506 |
atgaagattgggagttgtttatgctaaaact |
6237476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 6101098 - 6101050
Alignment:
| Q |
93 |
cgaatggaattaaagtgattctaacaactcgtttgaaacatgtgtgtca |
141 |
Q |
| |
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||||||| |||||| | ||||| ||||||||||||||||| |||||||| |
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| T |
6101098 |
cgaatggcattaaactcattctgacaactcgtttgaaacacgtgtgtca |
6101050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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