View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5329_low_37 (Length: 233)
Name: NF5329_low_37
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5329_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 8140603 - 8140793
Alignment:
| Q |
1 |
tagcatatttcttatgttaattatgaaatttatgtttggtgtcataggctcatcaaaaaggaaaaattggagtgaccttagtgactcacttctttgaacc |
100 |
Q |
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| T |
8140603 |
tagcatatttcttatgttaattatgaaatttatgtttggtgtcataggctcatcaaaaaggaaaaattggagtgaccttagtgactcacttctttgaacc |
8140702 |
T |
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| Q |
101 |
atattccaatagtgttgctgataaaaaggctgcaggtcgagcacttgacttcttttttggatggtatgtattttcaaattaagaaagtgta |
191 |
Q |
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| T |
8140703 |
atattccaatagtgttgctgataaaaaggctgcaggtcgagcacttgacttcttttttggatggtatgtattttcaaattaagaaagtgta |
8140793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 8164296 - 8164443
Alignment:
| Q |
23 |
atgaaatttatgtttggtgtcataggctcatcaaaaaggaaaaattggagtgaccttagtgactcacttctttgaaccatattccaatagtgttgctgat |
122 |
Q |
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| T |
8164296 |
atgaaatttatgtttggtgccataggctcatcaaaaaggaaaaattggaattaccttaattactcactactatgaaccatattccaatagtgttgccgat |
8164395 |
T |
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| Q |
123 |
aaaaaggctgcaggtcgagcacttgacttcttttttggatggtatgta |
170 |
Q |
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| T |
8164396 |
cacaaagctgcaagtagagcacttgactttttatttggatggtatgta |
8164443 |
T |
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