View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5329_low_38 (Length: 226)

Name: NF5329_low_38
Description: NF5329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5329_low_38
NF5329_low_38
[»] chr8 (8 HSPs)
chr8 (1-217)||(5887103-5887319)
chr8 (3-217)||(5842966-5843180)
chr8 (3-217)||(5849708-5849922)
chr8 (63-217)||(5984557-5984711)
chr8 (63-217)||(5949029-5949183)
chr8 (67-215)||(5960298-5960446)
chr8 (78-217)||(5921152-5921291)
chr8 (140-213)||(39916637-39916710)
[»] chr2 (2 HSPs)
chr2 (86-217)||(42788930-42789061)
chr2 (183-213)||(27172818-27172848)
[»] chr7 (2 HSPs)
chr7 (158-217)||(45676080-45676139)
chr7 (167-213)||(48892630-48892676)
[»] chr3 (2 HSPs)
chr3 (163-213)||(44674039-44674089)
chr3 (158-213)||(34626700-34626755)
[»] chr5 (1 HSPs)
chr5 (163-213)||(1281333-1281383)
[»] chr1 (2 HSPs)
chr1 (163-213)||(16127411-16127461)
chr1 (157-210)||(37962871-37962924)
[»] chr4 (1 HSPs)
chr4 (161-213)||(43560551-43560603)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5887103 - 5887319
Alignment:
Q  1 aaccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887103 aaccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcct 5887202  T
Q  101 agaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaac 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887203 agaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaac 5887302  T
Q  201 tctttccacatctctgc 217  Q
    ||||||| |||||||||    
T  5887303 tctttccgcatctctgc 5887319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 5842966 - 5843180
Alignment:
Q  3 ccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctag 102  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5842966 ccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagctattgtaatggatatacctattgcctag 5843065  T
Q  103 aatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactc 202  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||     
T  5843066 aatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgttttaaatcaggtcttagataatttatccatcttaatctacaactt 5843165  T
Q  203 tttccacatctctgc 217  Q
    |||||||||||||||    
T  5843166 tttccacatctctgc 5843180  T

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Target: chr8; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 5849708 - 5849922
Alignment:
Q  3 ccttttgaactttgagaataataaattgtaaagattgacatgaaaagcacatcggaggaaaagaaaaagagctattgtaatggatatacctattgcctag 102  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||  |||| |||||||||||| |||||| |||||||||||||||||||||||||||    
T  5849708 ccttttgaactttgagaataataaatggtaatgattgacatgaaaataacattggaggaaaagaagaagagcaattgtaatggatatacctattgcctag 5849807  T
Q  103 aatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactc 202  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  5849808 aatgctgtgtagttctataatgattgctacttcttcataagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactt 5849907  T
Q  203 tttccacatctctgc 217  Q
    |||||||||||||||    
T  5849908 tttccacatctctgc 5849922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 5984557 - 5984711
Alignment:
Q  63 aagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 162  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984557 aagaaagagagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 5984656  T
Q  163 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5984657 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 5984711  T

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Target: chr8; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 5949029 - 5949183
Alignment:
Q  63 aagaaaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 162  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5949029 aagaaagagagctaatgtaatgaatatacctattgcctagaatgttgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaa 5949128  T
Q  163 atcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 217  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5949129 atcaggtcttagataatttatccatcttaatcttcaactctttccacatctctgc 5949183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 5960298 - 5960446
Alignment:
Q  67 aaaagagctattgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatca 166  Q
    |||||||||| ||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5960298 aaaagagctaatgtaatgaatatacctattgcctaaaatgttgtggagttctacaatgagtgctacttcttgttgagagaaacttccacgtttcaaatca 5960397  T
Q  167 ggtcttagataatttatccatcttaatctgcaactctttccacatctct 215  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5960398 ggtcttagataatttatccatcttaatctacaactctttccacatctct 5960446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 5921152 - 5921291
Alignment:
Q  78 tgtaatggatatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 177  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  5921152 tgtaatgaatatacctattgcctagaatgctgtggagttctagaatgagtgcagcttcttgatgagagaaacttccacgtttcaaatcaggtcttagata 5921251  T
Q  178 atttatccatcttaatctgcaactctttccacatctctgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5921252 atttatccatcttaatctgcaactctttccacatctctgc 5921291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 39916710 - 39916637
Alignment:
Q  140 tgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 213  Q
    |||| |||| ||||||| || | ||||||||| |||||||| |||||||| |||||||| || |||||||||||    
T  39916710 tgagtgaaatttccacgcttaagatcaggtctgagataattgatccatctcaatctgcagctttttccacatct 39916637  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 42788930 - 42789061
Alignment:
Q  86 atatacctattgcctagaatgctgtgtagttctacaatgagtgctacttcttgatgagagaaacttccacgtttcaaatcaggtcttagataatttatcc 185  Q
    |||||||| || ||||||||| | || ||||| | ||| || ||  |||||||  |||| |||||||||||||||||||||||||||| |||||||||||    
T  42788930 atatacctgtttcctagaatggtatgaagttcaataataagagcagcttcttgtggagaaaaacttccacgtttcaaatcaggtcttaaataatttatcc 42789029  T
Q  186 atcttaatctgcaactctttccacatctctgc 217  Q
    |||| || |||||||| |||||||||||||||    
T  42789030 atctcaacctgcaactttttccacatctctgc 42789061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 27172818 - 27172848
Alignment:
Q  183 tccatcttaatctgcaactctttccacatct 213  Q
    |||||||||||||||||||||||||||||||    
T  27172818 tccatcttaatctgcaactctttccacatct 27172848  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 45676080 - 45676139
Alignment:
Q  158 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatctctgc 217  Q
    ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  45676080 ttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacctctgc 45676139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 48892630 - 48892676
Alignment:
Q  167 ggtcttagataatttatccatcttaatctgcaactctttccacatct 213  Q
    ||||||||||| || |||||||||| ||||||||| |||||||||||    
T  48892630 ggtcttagatagttcatccatcttagtctgcaactttttccacatct 48892676  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 44674089 - 44674039
Alignment:
Q  163 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 213  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||    
T  44674089 atcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatct 44674039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 34626700 - 34626755
Alignment:
Q  158 ttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 213  Q
    |||||||||||||| ||||| || |||||||| ||||| |||||||||||||||||    
T  34626700 ttcaaatcaggtctcagatagttgatccatctcaatctacaactctttccacatct 34626755  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 1281383 - 1281333
Alignment:
Q  163 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 213  Q
    |||||| |||| ||||||| |||||||||| || |||||||||||||||||    
T  1281383 atcaggacttaaataatttgtccatcttaacctacaactctttccacatct 1281333  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 16127411 - 16127461
Alignment:
Q  163 atcaggtcttagataatttatccatcttaatctgcaactctttccacatct 213  Q
    ||||| ||||| |||||| |||||||| ||||| |||||||||||||||||    
T  16127411 atcagttcttaaataattaatccatctcaatctacaactctttccacatct 16127461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 37962924 - 37962871
Alignment:
Q  157 tttcaaatcaggtcttagataatttatccatcttaatctgcaactctttccaca 210  Q
    |||||||||||| || |  ||||||||||||||||| ||||||||||| |||||    
T  37962924 tttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccaca 37962871  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 43560551 - 43560603
Alignment:
Q  161 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 213  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  43560551 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 43560603  T

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