View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5330-Insertion-2 (Length: 1065)

Name: NF5330-Insertion-2
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5330-Insertion-2
NF5330-Insertion-2
[»] chr2 (9 HSPs)
chr2 (466-889)||(31717300-31717728)
chr2 (603-827)||(31705022-31705249)
chr2 (726-833)||(31682154-31682261)
chr2 (711-834)||(31689576-31689698)
chr2 (37-127)||(31703731-31703821)
chr2 (711-806)||(31694635-31694730)
chr2 (72-154)||(31680834-31680916)
chr2 (16-112)||(31693462-31693558)
chr2 (354-396)||(8752599-8752641)
[»] chr3 (1 HSPs)
chr3 (501-535)||(31864319-31864353)


Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 466 - 889
Target Start/End: Original strand, 31717300 - 31717728
Alignment:
Q  466 agtatagtagctacaataattcactagttagtagtctatgtagcactgatacttcatattaaagatgtgtatggtgtctggcgtgtgtttgtgttaaatt 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31717300 agtatagtagctacaataattcactagttagtagtctatgtagcactgatacttcatattaaagatgtgtatggtgtctggcgtgtgtttgtgttaaatt 31717399  T
Q  566 ataatca----gtgcagtcgtatcaatgtcaaatattattctatgcatatgttaaacattttgaacgatattaatgaaattttgagaaaaagttgaagac 661  Q
    ||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31717400 ataattaattagtgcagtcgtatcaatgtcaaatattattctatgcatatgttaaacattttgaacgatattaatgaaattttgataaaaagttgaagac 31717499  T
Q  662 ttgtgacaagtacaacacattccagtttcttttttctatcgattgtttccaagtttggctgttctttttcttgatgataggacaaaaacattcttgaaga 761  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31717500 ttgtgacaagtacaacacattccagtttcttttttctatcgattgtttccaagtttggctgttctttttcttgatgataggacaaaaacattcttgaaga 31717599  T
Q  762 atttaaggcaaaaaatcaggcaagtactcttcaatttgtggagaatgcacatatagaaggaactgtttttc-aaggtatacaatatacgcacatatagaa 860  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  31717600 attaaaggcaaaaaatcaggcaagtactcttcaatttgtggagaatgcacatatagaaggaactgtttttcaaaggtatacaatatatgcacatatagaa 31717699  T
Q  861 gtgacttatactattatccctctcttcca 889  Q
    |||||||||||||||||||||||||||||    
T  31717700 gtgacttatactattatccctctcttcca 31717728  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 603 - 827
Target Start/End: Original strand, 31705022 - 31705249
Alignment:
Q  603 tatgcatatgttaaacattttgaacgatattaatgaaattttgagaaaaagttgaagacttgtgacaagtacaacacatt----ccagtttcttttttct 698  Q
    |||||||| ||| |||||| |||| |||||| || |||||||||||||| ||||| ||||| |||   ||||||||||||    ||| |||| |||||||    
T  31705022 tatgcatacgttgaacattctgaaagatattcat-aaattttgagaaaa-gttgacgacttctgaagcgtacaacacattaattccaatttcctttttct 31705119  T
Q  699 atcgattgtttccaagtttggctgttctttttc-ttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaatt 797  Q
     | |||||||| ||||||||||| ||||||||  || ||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  31705120 ttggattgtttacaagtttggctattcttttttatttatgataggacaaaaatattcttgaagaatttaaagcaaaaaatcaagcaagtactcttcaatt 31705219  T
Q  798 tgtggagaatgcacatatagaaggaactgt 827  Q
    |||||||||||||   ||||||||||||||    
T  31705220 tgtggagaatgcaagcatagaaggaactgt 31705249  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 726 - 833
Target Start/End: Original strand, 31682154 - 31682261
Alignment:
Q  726 tttttcttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaatttgtggagaatgcacatatagaaggaact 825  Q
    ||||||||||| ||||||||| || ||||||||||||||||  |||| ||||||||||||||  |||||||||||| |||||||  ||||||||||| ||    
T  31682154 tttttcttgatcataggacaataatattcttgaagaatttagtgcaagaaatcaggcaagtagccttcaatttgtgaagaatgcctatatagaaggatct 31682253  T
Q  826 gtttttca 833  Q
    || |||||    
T  31682254 gtatttca 31682261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 711 - 834
Target Start/End: Original strand, 31689576 - 31689698
Alignment:
Q  711 caagtttggctgttctttttcttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaatttgtggagaatgca 810  Q
    |||||||||||||| ||| |||||||||||||||||  | ||||||||||||||||  |||| || |||||||||||  |||||||||||||||||| |     
T  31689576 caagtttggctgtt-tttctcttgatgataggacaatgatattcttgaagaatttagtgcaagaagtcaggcaagtagccttcaatttgtggagaatacg 31689674  T
Q  811 catatagaaggaactgtttttcaa 834  Q
     | ||||||||| |||| ||||||    
T  31689675 aaaatagaaggatctgtatttcaa 31689698  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 31703731 - 31703821
Alignment:
Q  37 gtaatgctactggcacttccttcattcatgcctcatatgttaaatttgcggaggctgccggcgctagagttgttcccctcatttataacga 127  Q
    |||||||||| ||| ||||||||||||| ||||| ||||| ||||| | ||||||||| ||||||||||| ||||| |||||||| |||||    
T  31703731 gtaatgctacgggcgcttccttcattcacgcctcttatgtgaaattcgtggaggctgctggcgctagagtagttcctctcatttacaacga 31703821  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 711 - 806
Target Start/End: Original strand, 31694635 - 31694730
Alignment:
Q  711 caagtttggctgttctttttcttgatgataggacaaaaacattcttgaagaatttaaggcaaaaaatcaggcaagtactcttcaatttgtggagaa 806  Q
    ||||||||| ||||| ||||||||||||||||||||  | ||||||||||| |||   ||| |||||||||| || |  |||||||||||||||||    
T  31694635 caagtttggttgttccttttcttgatgataggacaacgatattcttgaagattttgcagcagaaaatcaggctagcagccttcaatttgtggagaa 31694730  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 31680834 - 31680916
Alignment:
Q  72 tatgttaaatttgcggaggctgccggcgctagagttgttcccctcatttataacgagtcaccagagaaacttctcaaggtatc 154  Q
    ||||||||||| |  || |||||||| ||||||||||||||||||||||||| |||| ||   |||| |||||||||||||||    
T  31680834 tatgttaaattcgttgaagctgccggtgctagagttgttcccctcatttataccgagccagaggagatacttctcaaggtatc 31680916  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 31693462 - 31693558
Alignment:
Q  16 atggtgtctctggccacctcggtaatgctactggcacttccttcattcatgcctcatatgttaaatttgcggaggctgccggcgctagagttgttcc 112  Q
    |||||| |||||| | |||| |||||||||||| | |||||| | |   ||||||||| |||||||||| ||||||||  || ||||||||||||||    
T  31693462 atggtgcctctggtcgcctcagtaatgctactgacgcttcctacttggctgcctcatacgttaaatttgtggaggctggtggtgctagagttgttcc 31693558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 8752641 - 8752599
Alignment:
Q  354 tttgaatttgctaataaatgtgaaatgacataaaaatgatatg 396  Q
    |||||||| ||| |||||| |||||||||||||||||||||||    
T  8752641 tttgaattagcttataaatatgaaatgacataaaaatgatatg 8752599  T

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Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 501 - 535
Target Start/End: Original strand, 31864319 - 31864353
Alignment:
Q  501 ctatgtagcactgatacttcatattaaagatgtgt 535  Q
    ||||||||||||||| |||||||||||||||||||    
T  31864319 ctatgtagcactgatgcttcatattaaagatgtgt 31864353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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