View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5330-Insertion-3 (Length: 818)
Name: NF5330-Insertion-3
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5330-Insertion-3 |
 | |
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| [»] scaffold0201 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
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| [»] chr7 (2 HSPs) |
| |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Original strand, 17354009 - 17354426
Alignment:
| Q |
9 |
tggtgaggccatatgattgattttggtgttgttgcgtttaggcaatccagaggatcgtttgatttagacaattttattgatatccttttgtgctgatgaa |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17354009 |
tggtgaggccatatgattgatgttggtgttgttgtgtttaggcaatccagaggatcgtttgatttagacaattttattgatatccttttgtgctgatgaa |
17354108 |
T |
|
| Q |
109 |
tagtgttacactcgggcaccaatgatgtttttagcttcttgttaactttgagccgactgagaggatatgcttgatcaacttgttttgagattgaaaatca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17354109 |
tagtgttacactcgggcaccaatgatgtttttagcttcttgttaactttgagccgaccgagaggatatgcttgatcaacttgttttgagattgaaaatca |
17354208 |
T |
|
| Q |
209 |
tttactttgtgttcatactctaacaagtaatgtgcttctaatatcatgcacacttgaacacacgttagtagacaatttgttccttggcaaatagaaaatg |
308 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17354209 |
tttactttgtgttcatactctaacgagtaatgtgcttctaatatcctgcacatttgaacacacgttagtagacaatttgttccttggcaaatagaaaatg |
17354308 |
T |
|
| Q |
309 |
aaatgatgacattcatttgctttgattgttatgttatcatcaaaatctaaggtgttagatattcaaaccaattcagttctcataggatgttcgttccaat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17354309 |
aaatgatgacattcatttgctttgattgttatgttatcatcaaaacctaaggtgttagatattcaaaccaattcggttctcataggatgttcgttccaat |
17354408 |
T |
|
| Q |
409 |
tgaataactttcttagat |
426 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17354409 |
tgaataactttcttagat |
17354426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 570 - 818
Target Start/End: Original strand, 14443454 - 14443702
Alignment:
| Q |
570 |
gacaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttg |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14443454 |
gacaatccactctttcattaaagaaacaaatcaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttg |
14443553 |
T |
|
| Q |
670 |
cagcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaat |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14443554 |
cagcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaat |
14443653 |
T |
|
| Q |
770 |
aaagggactaatactagctattgttgacagcccattaaaacacttaact |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14443654 |
aaagggactaatactagctattgttgacagcccattgaaacacttaact |
14443702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 552
Target Start/End: Original strand, 17354462 - 17354502
Alignment:
| Q |
512 |
ggaaatgttaatttgtaccctaagggcacaagataaagatc |
552 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
17354462 |
ggaaatgttaacttgtaccctaagagcacaagataaagatc |
17354502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 570 - 818
Target Start/End: Original strand, 16318 - 16566
Alignment:
| Q |
570 |
gacaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttg |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16318 |
gacaatccactctttcattaaagaaacaaatcaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttg |
16417 |
T |
|
| Q |
670 |
cagcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaat |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16418 |
cagcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaat |
16517 |
T |
|
| Q |
770 |
aaagggactaatactagctattgttgacagcccattaaaacacttaact |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16518 |
aaagggactaatactagctattgttgacagcccattgaaacacttaact |
16566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 570 - 818
Target Start/End: Original strand, 29346774 - 29347022
Alignment:
| Q |
570 |
gacaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttg |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29346774 |
gacaatccactctttcattaaagaaacaaatcaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttg |
29346873 |
T |
|
| Q |
670 |
cagcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaat |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29346874 |
cagcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaat |
29346973 |
T |
|
| Q |
770 |
aaagggactaatactagctattgttgacagcccattaaaacacttaact |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29346974 |
aaagggactaatactagctattgttgacagcccattgaaacacttaact |
29347022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 571 - 816
Target Start/End: Complemental strand, 4461204 - 4460959
Alignment:
| Q |
571 |
acaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttgc |
670 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
4461204 |
acaatccactctttcattaaaaaaacaaaccaaaagagaacaaagaccagactttaagacgggcattccccacccaagtacatgatcctatggattttgc |
4461105 |
T |
|
| Q |
671 |
agcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaata |
770 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4461104 |
agcctgagtaagctcatgagcacctacattacaagagcaattaataaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaata |
4461005 |
T |
|
| Q |
771 |
aagggactaatactagctattgttgacagcccattaaaacacttaa |
816 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4461004 |
aaaggactaatactagctattgttgacagcccattaaaacacttaa |
4460959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 570 - 818
Target Start/End: Original strand, 19500939 - 19501191
Alignment:
| Q |
570 |
gacaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttg |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19500939 |
gacaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttg |
19501038 |
T |
|
| Q |
670 |
cagcctgagcaagctcatgag----cagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcac |
765 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19501039 |
cagtctgagcaagctcatgagcaaccaactacattacaagagcgattaacaaagctaacagaactaccaactatactaccaaacaagtcatgacagtcac |
19501138 |
T |
|
| Q |
766 |
taataaagggactaatactagctattgttgacagcccattaaaacacttaact |
818 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19501139 |
taataaagggaataatactagctattgttgacatcccattaaaacacttaact |
19501191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 552
Target Start/End: Original strand, 35813762 - 35813802
Alignment:
| Q |
512 |
ggaaatgttaatttgtaccctaagggcacaagataaagatc |
552 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
35813762 |
ggaaatgttaacttgtgccctaagggcacaagataaagatc |
35813802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 552
Target Start/End: Complemental strand, 433707 - 433669
Alignment:
| Q |
514 |
aaatgttaatttgtaccctaagggcacaagataaagatc |
552 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
433707 |
aaatgttaacttgtaccctaaggacacaagataaagatc |
433669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 571 - 818
Target Start/End: Original strand, 6468105 - 6468345
Alignment:
| Q |
571 |
acaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttgc |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6468105 |
acaatccactctttcattaaagaaacaaaccaagagagaacaaaaacca--ctttaaggggggcattccccacccaagtacgtgatcctatggattttgc |
6468202 |
T |
|
| Q |
671 |
agcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacagtcactaata |
770 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
6468203 |
agcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctgacagaactaccaactaaactaccaaataagtcatgacagt-----ata |
6468297 |
T |
|
| Q |
771 |
aagggactaatactagctattgttgacagcccattaaaacacttaact |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6468298 |
aagggactaatactagctattgttgacagcccattaaaacacttaact |
6468345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 571 - 761
Target Start/End: Complemental strand, 2731688 - 2731499
Alignment:
| Q |
571 |
acaatccactctttcattaaagaaacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttgc |
670 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||||||||| |||||| |
|
|
| T |
2731688 |
acaatccactctttcattaaagtaacaaaccaagagagaacaaagaccagactttaagaggagcattcctcatctaagtacgtgatcctatgcattttgg |
2731589 |
T |
|
| Q |
671 |
agcctgagcaagctcatgagcagctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaacaagtcatgacag |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
2731588 |
-gcctgagcaagctcatgagcagctacattagaagagcgattaacaaagttaacagaaccaccaactaagctaccaaacaagtcatgacag |
2731499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 622 - 818
Target Start/End: Complemental strand, 35789089 - 35788893
Alignment:
| Q |
622 |
ctttaagaggggcattccccacccaagtacgtgatcctattgattttgcagcctgagcaagctcatgagcagctacattacaagagcgattaacaaagct |
721 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35789089 |
ctttaagaggggcattccccacccaaatacgtgattctattgattttgcagcctgagcaagctcatgagcagctacattacaagagcgattaacaaagct |
35788990 |
T |
|
| Q |
722 |
aacagaactaccaactaaactaccaaacaagtcatgacagtcactaataaagggactaatactagctattgttgacagcccattaaaacacttaact |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35788989 |
aacagaactaccaactaaactaccaaacaagtcatgacagtcactaataaagggactaatactagctattgttgacagtccattaaaacacttaact |
35788893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 552
Target Start/End: Original strand, 12570078 - 12570118
Alignment:
| Q |
512 |
ggaaatgttaatttgtaccctaagggcacaagataaagatc |
552 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
12570078 |
ggaaatgttaacttgtgccctaagggcacaagataaagatc |
12570118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 13383006 - 13383042
Alignment:
| Q |
512 |
ggaaatgttaatttgtaccctaagggcacaagataaa |
548 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13383006 |
ggaaatgttaacttgtaccctaagggcacaagataaa |
13383042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 594 - 796
Target Start/End: Complemental strand, 2637150 - 2636947
Alignment:
| Q |
594 |
aacaaaccaagagagaacaaagaccagactttaagaggggcattccccacccaagtacgtgatcctattgattttgcagcctgagcaagctcatgagcag |
693 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||||| |||| ||||||||||||| |
|
|
| T |
2637150 |
aacaaaccaagagagaacacagaccagactttaagaagggcattccccacccaagtacatgatcctagagtttttgcagccagagcgagctcatgagcag |
2637051 |
T |
|
| Q |
694 |
ctacattacaagagcgattaacaaagctaacagaactaccaactaaactaccaaac-aagtcatgacagtcactaataaagggactaatactagctattg |
792 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||| || |||||||||||||||||||| || || ||||||||||||| |
|
|
| T |
2637050 |
ctacattacaagagcgattaacaaaactaacagaacaaccatctaaattaccaaacaaaatcatgacagtcactaataaaagggcttatactagctattg |
2636951 |
T |
|
| Q |
793 |
ttga |
796 |
Q |
| |
|
|||| |
|
|
| T |
2636950 |
ttga |
2636947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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