View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5330-Insertion-5 (Length: 729)
Name: NF5330-Insertion-5
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5330-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 148 - 726
Target Start/End: Complemental strand, 2029960 - 2029369
Alignment:
| Q |
148 |
ctaccttaaaataattttcatcaattaagtgtcaagatattttaattttcgtctgaacaggaattgaacaattgttttgtccgtcaagtggattcaccta |
247 |
Q |
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| T |
2029960 |
ctaccttaaaataattttcatcaattaagtgtcaagatattttaattttcgtctaaacacaaattgaataat-gttttgtccgtcaagtggattcaccta |
2029862 |
T |
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| Q |
248 |
ttgatccatatactttaggttcataattcaaccgagtaatcccacgacgagtcaatttgtctttagttgatagttggtttttcagtggtcttcgagaaaa |
347 |
Q |
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| T |
2029861 |
ttgatctatatactttaggttcataattcaaccgagtaatcccacgacgagtcaatttgtctttagttgaaagttggtttttcaatggtcttcgagaaaa |
2029762 |
T |
|
| Q |
348 |
gtggggaatcgacaaaacaatcatcatttctcatggtaaaataagtttttctcttttttacttaattaatagaatccttataaattttattccatcacca |
447 |
Q |
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| T |
2029761 |
atggggaatcgacaaaacaatcataatttctcatggtaaaataagtttttctcttttttact----taatagaatccttatgaattttattccatcacca |
2029666 |
T |
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| Q |
448 |
agaataccccatattaacccgcaaagatgtgttatgtgacaattcagacactttatcacaaaatcttcctcctattgaaagtatgtcttct--------- |
538 |
Q |
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| T |
2029665 |
agaataccccatattaacccgcaaagatgtgt--tgtgacaattcagacactttatcacaaaatcttcctcctattgaaagtatgtcttctccacctcca |
2029568 |
T |
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| Q |
539 |
-----------ccaccgacctcactaaactttagcattccttccattatttcgtgtttcttaaagccaaattataatcttacttaacctatctttcaaca |
627 |
Q |
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| T |
2029567 |
cccttcatcccccaccgacctcactaaactttagcattccttccattatttcgtctttattaaagccaaattataatcttacttaacctatctttcaaca |
2029468 |
T |
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| Q |
628 |
attctttatcaaatcataatttaaaccaaaacaatgtatttcaaccatttatgaccaccttcgaaatgttattagaaaattaactaccggggaataacg |
726 |
Q |
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| T |
2029467 |
attctttatcaaatcataatttaaaccaaaacaatgtatttcaaccatttatgaccaccttcgaaatgttattagaaaattaactattggggaataacg |
2029369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 2030265 - 2030130
Alignment:
| Q |
19 |
ccataatatggttgcttgtttcttcaacatgttggcaaagtcttatatttatgctttttcatatactccacaaaatagttacaaatcactcgcattgaga |
118 |
Q |
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| T |
2030265 |
ccataatatggttgcttgtttcttcaacatgttggcaaagtcttatatttatgctttttcatatactccacaaaatagttacaaatcactcgcattgaga |
2030166 |
T |
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| Q |
119 |
cacattcacgctttgaagtcgtttgaaaactacctt |
154 |
Q |
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| T |
2030165 |
cacattcacgctttgaagtggtttgaaaactacctt |
2030130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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