View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5330_high_1 (Length: 343)
Name: NF5330_high_1
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5330_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23458930 - 23458712
Alignment:
| Q |
1 |
cggcaaatcaatccgggatgacaattttccatttggaaacttcgttgatacgtatttcattacagaaaagtatcgtgaagtatttgcgaagtgggaatca |
100 |
Q |
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| T |
23458930 |
cggcaagtcaatcggggatgacaattttccatatgaagacttcgttgataagcatttcattacagaaaagtatcataaagaatttgcgaagtgggaatca |
23458831 |
T |
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| Q |
101 |
gaaaagtgttttcatgctttgctatcagcgcagattcaatctgcggcacttgttcgttgtctagaacaaaggtttggtgatttggaaaagaaatgtaaga |
200 |
Q |
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| T |
23458830 |
gaaat---tttccatgttttgctatcagcgccgattcaatctgtggcacttgttcgttgtctagaacaaagttttggtgatttgaaaaagaaatgtaaga |
23458734 |
T |
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| Q |
201 |
cttacattgaagagaacactga |
222 |
Q |
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||||||||||||||||| |||| |
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| T |
23458733 |
cttacattgaagagaacgctga |
23458712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 23449085 - 23449169
Alignment:
| Q |
2 |
ggcaaatcaatccgggatgacaattttccatttggaaacttcgttgatacgtatttcattacagaaaagtatcgtgaagtatttg |
86 |
Q |
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| T |
23449085 |
ggcacatcaatctgggatgacaattttccatttggagactttgttgataagcaattcattgcagaaaaggattgtgaagcatttg |
23449169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 23462832 - 23462775
Alignment:
| Q |
2 |
ggcaaatcaatccgggatgacaattttccatttggaaacttcgttgatacgtatttca |
59 |
Q |
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| T |
23462832 |
ggcacatcaatctgggatgacaattttccatttggagactttgttgataagcatttca |
23462775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 221 - 325
Target Start/End: Original strand, 31437616 - 31437720
Alignment:
| Q |
221 |
gagttggaggcttatgtctgatactaactccttgatgagccgtattttcaaaagtaggtactatcctcggagtaacttcttggaggcaaccataggatac |
320 |
Q |
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| T |
31437616 |
gagttggaggcttatgtctgatgctaactccttgatgagccgtattttcaaaagcaggtactatccccggagtaacttcttggaggcaaccataggatac |
31437715 |
T |
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| Q |
321 |
caacc |
325 |
Q |
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||||| |
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| T |
31437716 |
caacc |
31437720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 221 - 325
Target Start/End: Original strand, 31192621 - 31192725
Alignment:
| Q |
221 |
gagttggaggcttatgtctgatactaactccttgatgagccgtattttcaaaagtaggtactatcctcggagtaacttcttggaggcaaccataggatac |
320 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |
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| T |
31192621 |
gagttggaggcttatgtctgatgctaactccttgatgagccgtattttcaaaagtaggtactatccctggtgtaacgtcttggaggcaaccataggatac |
31192720 |
T |
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| Q |
321 |
caacc |
325 |
Q |
| |
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||||| |
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| T |
31192721 |
caacc |
31192725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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