View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5330_high_2 (Length: 307)
Name: NF5330_high_2
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5330_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 1879736 - 1879856
Alignment:
| Q |
14 |
ttctaacaatcgtctatttgatgttttcactttggtacattttaatggtaagatttgtggaatgttttgttcatattttaaaagttctaaacaccaaatt |
113 |
Q |
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| T |
1879736 |
ttctaacaatcgtctatttgatgttttcactttggtacattttaatggtaggatttatggaatgttttgatcatattttaaaagttttaaacaccaaatt |
1879835 |
T |
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| Q |
114 |
ccacactactaagtgtggaac |
134 |
Q |
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| T |
1879836 |
ccacactactaagcgtggaac |
1879856 |
T |
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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 1879910 - 1879992
Alignment:
| Q |
188 |
atcttctggtttttggtgaaaagggc-atagtaatatgaaattcgattgaaaagctaataaagtttggtaaaaaattgttcta |
269 |
Q |
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| T |
1879910 |
atcttctggtttttggtgaaaagggttatagtaatatgaaattcgatcgaaaagttaataaagtttggtaaaaaattgttcta |
1879992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 1886344 - 1886405
Alignment:
| Q |
34 |
atgttttcactttggtacattttaatggtaagatttgtggaatgttttgttcatattttaaa |
95 |
Q |
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| T |
1886344 |
atgttttcactatggtacattttactggtaggatttgtggaatattttgttcatattttaaa |
1886405 |
T |
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