View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5330_high_3 (Length: 281)
Name: NF5330_high_3
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5330_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 26578690 - 26578445
Alignment:
| Q |
14 |
gagatgaatgtgtatattgatgatgtaatggtcaaatacattcccttccaaaaccatttgttggaactagagaaaactttcaaaaagtatgaggctatat |
113 |
Q |
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| T |
26578690 |
gagatgaatgtgtatattgatgatgtaatggtcaaatacattcccttccaaaaccatttgttggaactagagaagactttcaaaaactatgaggctatat |
26578591 |
T |
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| Q |
114 |
ggtttaaagatgaatccagttaaatgcacatttggagtatcatctggtaacttcattggttccttagtacacaatnnnnnnntttaattggacaagaaca |
213 |
Q |
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| T |
26578590 |
ggtttaaagatgaatccagctaaatgcatatttggagtatcatctggtaacttcattggttccttagtacacaataaaaaaaattaattggacaagaaca |
26578491 |
T |
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| Q |
214 |
agggtaaagctatcttggaggcaagaccctcaaacacaacgaaaga |
259 |
Q |
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| T |
26578490 |
aaggtaaagctatcttggaggcaagaccctcaaacacaacgaaaga |
26578445 |
T |
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