View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5330_low_4 (Length: 271)
Name: NF5330_low_4
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5330_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 40630990 - 40630732
Alignment:
| Q |
1 |
tttgagtttaaatataacttatgtatgatttatagnnnnnnnntccaactgtaaacatttcttgattttgaattttagtttaagttttgtatgatttaaa |
100 |
Q |
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| T |
40630990 |
tttgagtttaaatataacttatgtatgatttatagaaaaaaa-tccaactgtaaacatttcttgattttgaattttagtttaagttttgtatgatttaaa |
40630892 |
T |
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| Q |
101 |
gaataccataaaatgatctacagcggaaatttgatgaatacctttgcatatgtgaaccgaaaataatagaatgaggacgttgaatagtgtagttggttca |
200 |
Q |
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| T |
40630891 |
gaataccataaaatgatctacagcggtaatttgatgaatacctttgcatatgtgaaccgaaaataatagaacgaggacgttgaatagtgtagttggttca |
40630792 |
T |
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| Q |
201 |
catttgttgtttctctttaatcatcctctctcttttaatagcttctccaataatccctat |
260 |
Q |
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| T |
40630791 |
catttgttgtttctctttaatcatcctctctcttttaatagcttctccaataatccctat |
40630732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 6475229 - 6475190
Alignment:
| Q |
59 |
ttcttgattttgaattttagtttaagttttgtatgattta |
98 |
Q |
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| T |
6475229 |
ttcttgagtttgaatttcagtttaagttttgtatgattta |
6475190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 40631364 - 40631302
Alignment:
| Q |
94 |
atttaaagaataccataaaatgatctacagcggaaatttgatgaatacctttgcatatgtgaa |
156 |
Q |
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| T |
40631364 |
atttaatgaataccataaaatgatgtataacaaaaatttgatgaatacctatgaatatgtgaa |
40631302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 21443622 - 21443571
Alignment:
| Q |
105 |
accataaaatgatctacagcggaaatttgatgaatacctttgcatatgtgaa |
156 |
Q |
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| T |
21443622 |
accataaaatgatgtatagcagaaatttgatgaatacctttgcatatgtgaa |
21443571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 21444016 - 21443970
Alignment:
| Q |
88 |
tgtatgatttaaagaataccataaaatgatctacagcggaaatttga |
134 |
Q |
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| T |
21444016 |
tgtatgatttaatgaataccataaaatgatgtatagcgggaatttga |
21443970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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