View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5330_low_6 (Length: 249)
Name: NF5330_low_6
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5330_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 40631371 - 40631130
Alignment:
| Q |
18 |
gatagaaatttaatgaataccataaaatgatgtataacaaaaatttgatgaatac----------gtgaaaacaaaagaatgaagaggttaaaaagtgaa |
107 |
Q |
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| T |
40631371 |
gatagaaatttaatgaataccataaaatgatgtataacaaaaatttgatgaatacctatgaatatgtgaaaacaaaagaatgaagaggttaaaaagtgaa |
40631272 |
T |
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| Q |
108 |
tagcaacatgttcataacattgcagtttggagtaattagtgtatattctacagcattttatgaagcctgatcttaatgaaatttaatttttattgtttat |
207 |
Q |
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| T |
40631271 |
tagcaacatgttcataacattgcagtttggagtaattagtgtatattctacagcattttatgaagccagatcttaatgaaatttaatttttattgtttat |
40631172 |
T |
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| Q |
208 |
atttgtgtcttaataataataccctggatgatgttgattgtt |
249 |
Q |
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| T |
40631171 |
atttgtgccttaataataataccctggatgatgttgattgtt |
40631130 |
T |
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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 42775175 - 42775128
Alignment:
| Q |
25 |
atttaatgaataccataaaatgatgtataacaaaaatttgatgaatac |
72 |
Q |
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| T |
42775175 |
atttaatgaataccataaaatgatgtataacataaatttgacgaatac |
42775128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 33233429 - 33233379
Alignment:
| Q |
184 |
tgaaatttaatttttattgtttatatttgtgtcttaataataataccctggatg |
237 |
Q |
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| T |
33233429 |
tgaaattta-tttttattgtttatatttgtgtcttaat--taatacccgggatg |
33233379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 21443627 - 21443586
Alignment:
| Q |
31 |
tgaataccataaaatgatgtataacaaaaatttgatgaatac |
72 |
Q |
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| T |
21443627 |
tgaagaccataaaatgatgtatagcagaaatttgatgaatac |
21443586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 21444010 - 21443982
Alignment:
| Q |
25 |
atttaatgaataccataaaatgatgtata |
53 |
Q |
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| T |
21444010 |
atttaatgaataccataaaatgatgtata |
21443982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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