View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5330_low_7 (Length: 240)

Name: NF5330_low_7
Description: NF5330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5330_low_7
NF5330_low_7
[»] chr4 (2 HSPs)
chr4 (1-222)||(2348576-2348796)
chr4 (1-29)||(2828475-2828503)
[»] chr2 (7 HSPs)
chr2 (90-222)||(97875-98007)
chr2 (91-190)||(6397862-6397964)
chr2 (1-35)||(7744036-7744070)
chr2 (1-29)||(33192-33220)
chr2 (1-29)||(11021532-11021560)
chr2 (1-33)||(17946089-17946121)
chr2 (1-29)||(42880875-42880903)
[»] chr3 (2 HSPs)
chr3 (105-209)||(38113477-38113584)
chr3 (91-209)||(45035388-45035509)
[»] chr6 (1 HSPs)
chr6 (1-40)||(30639599-30639638)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-30)||(38342-38371)
[»] chr8 (1 HSPs)
chr8 (1-29)||(44620733-44620761)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2348796 - 2348576
Alignment:
Q  1 attcagggacgaagttgatgattcactcttcaataataattccataaatttaaaattaattaatgagttaaacgccgcttcttcaccataacagtcccgt 100  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2348796 attcagcgacgaagttgatgatttactcttcaataataattccataaatttaaaattaattaatgagttaa-cgccgcttcttcaccataacagtcccgt 2348698  T
Q  101 tctctctccaaaaccaaccttcttcaccatgaaattataactgcagcttcatgaaaccaacatctcatttatccatcaccataaccaacaaatctgtgag 200  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2348697 tctctctccaaaagcaaccttcttcaccatgaaattataactacagcttcatgaaaccaacatctcatttatccatcaccataaccaacaaatctgtgag 2348598  T
Q  201 accacactttgaggttgcgagc 222  Q
    ||||||||||||||||||||||    
T  2348597 accacactttgaggttgcgagc 2348576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2828475 - 2828503
Alignment:
Q  1 attcagggacgaagttgatgattcactct 29  Q
    |||||||||||||||||||||||||||||    
T  2828475 attcagggacgaagttgatgattcactct 2828503  T

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Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 97875 - 98007
Alignment:
Q  90 aacagtcccgttctctctccaaaaccaaccttcttcaccatgaaattataactgcagcttcatgaaaccaacatctcatttatccatcaccataaccaac 189  Q
    |||||| |||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  97875 aacagttccgttcttcctccaaaaccaacctccttcatcatgaaattataactgcagcttcatgaaaccaacatctcatttattcatcaccataaccaac 97974  T
Q  190 aaatctgtgagaccacactttgaggttgcgagc 222  Q
    |||||||||||||||||| | |||| |||||||    
T  97975 aaatctgtgagaccacacatagaggctgcgagc 98007  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 6397862 - 6397964
Alignment:
Q  91 acagtcccgttctctctccaaaaccaaccttcttcaccatgaaattataactgcagcttcatgaaaccaacatctcatt---tatccatcaccataacca 187  Q
    ||||| ||||||  |||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||||   |||||| |||||||||||    
T  6397862 acagttccgttcattctccaaaaccaacctccttcaccatgaaattagaactgcagcttcgtgaaaccaatatctcattttgtatccaccaccataacca 6397961  T
Q  188 aca 190  Q
    |||    
T  6397962 aca 6397964  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7744070 - 7744036
Alignment:
Q  1 attcagggacgaagttgatgattcactcttcaata 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  7744070 attcagggacgaagttgatgattcactcttaaata 7744036  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33220 - 33192
Alignment:
Q  1 attcagggacgaagttgatgattcactct 29  Q
    |||||||||||||||||||||||||||||    
T  33220 attcagggacgaagttgatgattcactct 33192  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 11021560 - 11021532
Alignment:
Q  1 attcagggacgaagttgatgattcactct 29  Q
    |||||||||||||||||||||||||||||    
T  11021560 attcagggacgaagttgatgattcactct 11021532  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17946121 - 17946089
Alignment:
Q  1 attcagggacgaagttgatgattcactcttcaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  17946121 attcagggacgaagttgatgattcagtcttcaa 17946089  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 42880875 - 42880903
Alignment:
Q  1 attcagggacgaagttgatgattcactct 29  Q
    |||||||||||||||||||||||||||||    
T  42880875 attcagggacgaagttgatgattcactct 42880903  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 38113477 - 38113584
Alignment:
Q  105 tctccaaaaccaaccttcttcaccatgaaattataactgcagcttcatgaaaccaacatctcatt---tatccatcaccataaccaacaaatctgtgaga 201  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||| ||||||||| ||||||||   |||||| ||||||||||||||  ||  |||||    
T  38113477 tctccaaaaccaacctccttcaccatgaaattagaactgtagcttcgtgaaaccaatatctcattttgtatccaccaccataaccaacacgtcaatgaga 38113576  T
Q  202 ccacactt 209  Q
    ||||||||    
T  38113577 ccacactt 38113584  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 45035388 - 45035509
Alignment:
Q  91 acagtcccgttctctctccaaaaccaaccttcttcaccatgaaattataactgcagcttcatgaaaccaacatctcatt---tatccatcaccataacca 187  Q
    ||||| ||||||  |||||||||||||||| |||||||||||||||| ||||| |||||| |||||| || ||||||||   |||||| |||||||||||    
T  45035388 acagttccgttcattctccaaaaccaacctccttcaccatgaaattagaactgtagcttcgtgaaacgaatatctcattttgtatccaccaccataacca 45035487  T
Q  188 acaaatctgtgagaccacactt 209  Q
    |||  ||  |||||||||||||    
T  45035488 acacgtcaatgagaccacactt 45035509  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30639638 - 30639599
Alignment:
Q  1 attcagggacgaagttgatgattcactcttcaataataat 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30639638 attcagggacgaagttgatgattcactcttcaataataat 30639599  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38342 - 38371
Alignment:
Q  1 attcagggacgaagttgatgattcactctt 30  Q
    ||||||||||||||||||||||||||||||    
T  38342 attcagggacgaagttgatgattcactctt 38371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44620733 - 44620761
Alignment:
Q  1 attcagggacgaagttgatgattcactct 29  Q
    |||||||||||||||||||||||||||||    
T  44620733 attcagggacgaagttgatgattcactct 44620761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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