View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5331-Insertion-1 (Length: 111)
Name: NF5331-Insertion-1
Description: NF5331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5331-Insertion-1 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 2e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 1071549 - 1071652
Alignment:
| Q |
8 |
tggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaata |
107 |
Q |
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| T |
1071549 |
tggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaata |
1071648 |
T |
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| Q |
108 |
ctga |
111 |
Q |
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|||| |
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| T |
1071649 |
ctga |
1071652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 1087210 - 1087313
Alignment:
| Q |
8 |
tggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1087210 |
tggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaata |
1087309 |
T |
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| Q |
108 |
ctga |
111 |
Q |
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|||| |
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| T |
1087310 |
ctga |
1087313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-52
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 1103766 - 1103869
Alignment:
| Q |
8 |
tggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103766 |
tggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaata |
1103865 |
T |
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| Q |
108 |
ctga |
111 |
Q |
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|||| |
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| T |
1103866 |
ctga |
1103869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 1046736 - 1046839
Alignment:
| Q |
8 |
tggtcaacaaacatcacaacacaatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaata |
107 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046736 |
tggtcaacaaacatcacaacccgatctttgtcaactacaagttctcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaata |
1046835 |
T |
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| Q |
108 |
ctga |
111 |
Q |
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|||| |
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| T |
1046836 |
ctga |
1046839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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