View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5331-Insertion-2 (Length: 357)
Name: NF5331-Insertion-2
Description: NF5331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5331-Insertion-2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 44 - 357
Target Start/End: Original strand, 51273384 - 51273699
Alignment:
| Q |
44 |
ctagttcatagatat--cttaggattcaaaagacatataaagaaacaattgttcaacaaaaatttgcacaatcaagtatcagaatcgattatccaattaa |
141 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51273384 |
ctagttcatagatatatcttaggattcaaaagacatataaagaaacaattgttcaacaaaaatttgcacaaccaagtatcagaatcgattatccaattaa |
51273483 |
T |
|
| Q |
142 |
aatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatgg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51273484 |
aatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatgg |
51273583 |
T |
|
| Q |
242 |
agtcgtgtttcatacaagacagcagtgagttgcaaatcaatctcaaagcgtttcttagctttaatctcacagctccaattcattgaacgatcaattcttc |
341 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51273584 |
agtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaatctcacagctccaattcattgaacgatcaattcttc |
51273683 |
T |
|
| Q |
342 |
atcaccatactttgct |
357 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
51273684 |
atcaccatactttgct |
51273699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 115 - 348
Target Start/End: Complemental strand, 5051910 - 5051679
Alignment:
| Q |
115 |
aagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaattta |
214 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
5051910 |
aagtatcagaatcaattatccaatttaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggagaactta |
5051812 |
T |
|
| Q |
215 |
tcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatcaatctcaaagcgtttcttagctttaatctcacagc |
314 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||| |||||||||||| |||||| |||||||| ||| ||||||| |||||||| |||||||||||| |
|
|
| T |
5051811 |
tcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcacagc |
5051713 |
T |
|
| Q |
315 |
tccaattcattgaacgatcaattcttcatcacca |
348 |
Q |
| |
|
||||||||| |||||| || ||||||||||||| |
|
|
| T |
5051712 |
tccaattcaatgaacggccagttcttcatcacca |
5051679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 180 - 353
Target Start/End: Original strand, 14907599 - 14907773
Alignment:
| Q |
180 |
tagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatc |
279 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
|
| Q |
280 |
aatctcaaagcgtttcttagcttt-aatctcacagctccaattcattgaacgatcaattcttcatcaccatactt |
353 |
Q |
| |
|
||||||||||| |||||||||| ||| ||| | ||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
14907699 |
catctcaaagcgcatcttagctttaaatttcaaatctccaattcattgaatgatccattattcatcaccatactt |
14907773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University