View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5331_high_2 (Length: 441)
Name: NF5331_high_2
Description: NF5331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5331_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 50361372 - 50361160
Alignment:
| Q |
1 |
ttgataagctcaggaacaattcacaaaaactgattgaagaaagagggtaaaagaggcctgctagaaatggtgatcaatatgaatgggaaacccctattat |
100 |
Q |
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| T |
50361372 |
ttgataagctcaggaacaattcacaaaaactgattgaagaaagagagtaaaagaggcctgctataaatggtgatcaatatgaatgggaaacccctattat |
50361273 |
T |
|
| Q |
101 |
agccttaatatgagccgcagcaggtatgcattttcacatgttttagctactactactactcaatgagtaatctgacaaaaaatgtaatgataaatagtct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50361272 |
agccttaatatgagccgcagcaggtatgcattttcacatgttttagctactac---tactcaatgagtaatctgacaaaaaaggtaatgataaatagtct |
50361176 |
T |
|
| Q |
201 |
gcataattaattgtgg |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
50361175 |
gcataattaattgtgg |
50361160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 213 - 437
Target Start/End: Complemental strand, 50352810 - 50352586
Alignment:
| Q |
213 |
gtggaactcagttctaaaaagtatctctgtggagtgttgccttactcgcgtaagattgtcgcaaaagtatttccttgggggagaaagagaagcacatgtt |
312 |
Q |
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| T |
50352810 |
gtggaactcagttctaaaaagtatctctgtggagtgttgccttactcgcgtaagattgtcgcaaaagtatttccttggaggagaaagagaagcacatgtt |
50352711 |
T |
|
| Q |
313 |
tttcatgtgtaatgccgcaaatgaggtgtggaaagaggtggattatgggaaaccatcaaaccnnnnnnnatttagaggttagaacttagatcgtttcaac |
412 |
Q |
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| T |
50352710 |
tttcatgtgtaatgccgcaaatgaggtgcggaaagaggtggattatgggaaaccatcaaacctttttttatttagaggttagaacttagatcgtttcaac |
50352611 |
T |
|
| Q |
413 |
caatctgtttttgtgatgatgtcca |
437 |
Q |
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| T |
50352610 |
caatctgtttttgcaatgatgtcca |
50352586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 46567867 - 46567819
Alignment:
| Q |
47 |
gtaaaagaggcctgctagaaatggtgatcaatatgaatgggaaacccct |
95 |
Q |
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| T |
46567867 |
gtaaaagaggtctgctataaatggtgatcaatatgaatgggaaacccct |
46567819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 43468378 - 43468429
Alignment:
| Q |
47 |
gtaaaagaggcctgctagaaatggtgatcaatatgaatgggaaacccctatt |
98 |
Q |
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| T |
43468378 |
gtaaaagaggtctgctataaatggtgatcaatatgaatgggaaacccctatt |
43468429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 10644884 - 10644935
Alignment:
| Q |
47 |
gtaaaagaggcctgctagaaatggtgatcaatatgaatgggaaacccctatt |
98 |
Q |
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|||||||||| || ||| |||||||||||||||||||||||||||||||||| |
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| T |
10644884 |
gtaaaagaggtctactataaatggtgatcaatatgaatgggaaacccctatt |
10644935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 23536992 - 23537043
Alignment:
| Q |
47 |
gtaaaagaggcctgctagaaatggtgatcaatatgaatgggaaacccctatt |
98 |
Q |
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|||||||||| || ||| |||||||||||||||||||||||||||||||||| |
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| T |
23536992 |
gtaaaagaggtctactataaatggtgatcaatatgaatgggaaacccctatt |
23537043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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