View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5331_high_5 (Length: 257)
Name: NF5331_high_5
Description: NF5331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5331_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 45887342 - 45887565
Alignment:
| Q |
20 |
atctgttaatcagaaaatacatatcaccggaatctaacgcaagtgattgatgcatagtgcgttagcattgtaaatctcaagatgctaagttcaattcatg |
119 |
Q |
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| T |
45887342 |
atctgttaatcagaaaatacatatcaccggaatctagcgcaggtggttgatgcgtagtgcgttagcattgtaaatctcaagatgctaagttcaattcatg |
45887441 |
T |
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| Q |
120 |
cgaaaaatcaagcctatttcctttttctcaccttgccaccaccttgaactgaaggcttgcctttaccattaccatcctcaaacttcttctctttgttttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45887442 |
cgaaaaatcaagcctatttcctttttctcaccttgccaccaccttgaactgaaggcttgcctttaccattaccatcctcaaacttcttctctttgttttc |
45887541 |
T |
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| Q |
220 |
cactttctttccgttcctttgctt |
243 |
Q |
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|||||||||||||||||||||||| |
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| T |
45887542 |
cactttctttccgttcctttgctt |
45887565 |
T |
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