View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5331_low_6 (Length: 245)

Name: NF5331_low_6
Description: NF5331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5331_low_6
NF5331_low_6
[»] chr1 (23 HSPs)
chr1 (73-237)||(3385444-3385608)
chr1 (73-237)||(24883102-24883265)
chr1 (85-237)||(33400990-33401141)
chr1 (102-237)||(34970118-34970253)
chr1 (85-237)||(27171815-27171967)
chr1 (111-237)||(13946964-13947090)
chr1 (83-237)||(33156588-33156741)
chr1 (83-237)||(37948802-37948956)
chr1 (73-237)||(39781074-39781232)
chr1 (73-234)||(49776823-49776983)
chr1 (117-237)||(38338800-38338920)
chr1 (111-218)||(43297003-43297110)
chr1 (160-237)||(42082904-42082984)
chr1 (83-180)||(49777013-49777110)
chr1 (83-180)||(33400869-33400968)
chr1 (85-180)||(34970001-34970096)
chr1 (111-176)||(37948982-37949047)
chr1 (83-175)||(5771922-5772014)
chr1 (117-180)||(38338715-38338778)
chr1 (85-177)||(3385324-3385419)
chr1 (111-180)||(13947112-13947181)
chr1 (111-180)||(27171989-27172058)
chr1 (73-145)||(24882975-24883047)
[»] chr2 (19 HSPs)
chr2 (86-237)||(21265695-21265846)
chr2 (73-237)||(22563214-22563378)
chr2 (89-237)||(29892820-29892967)
chr2 (83-223)||(20296276-20296416)
chr2 (83-237)||(17200211-17200364)
chr2 (92-233)||(156971-157111)
chr2 (73-237)||(34645551-34645714)
chr2 (111-237)||(12232695-12232821)
chr2 (160-237)||(13979723-13979800)
chr2 (83-180)||(12232577-12232673)
chr2 (111-214)||(8237886-8237988)
chr2 (73-180)||(17200082-17200189)
chr2 (83-180)||(21265577-21265673)
chr2 (73-180)||(29892989-29893094)
chr2 (73-180)||(22563400-22563507)
chr2 (73-166)||(4371458-4371551)
chr2 (73-180)||(34645736-34645843)
chr2 (86-180)||(20296606-20296700)
chr2 (83-121)||(33491417-33491455)
[»] chr8 (15 HSPs)
chr8 (83-237)||(14999185-14999339)
chr8 (73-237)||(41721960-41722124)
chr8 (73-226)||(43801615-43801768)
chr8 (102-237)||(6911162-6911297)
chr8 (85-237)||(16324977-16325131)
chr8 (83-237)||(41403892-41404047)
chr8 (102-215)||(40621682-40621795)
chr8 (97-236)||(22781189-22781325)
chr8 (161-234)||(8489509-8489582)
chr8 (83-180)||(6911043-6911140)
chr8 (73-171)||(15009057-15009155)
chr8 (83-180)||(16324858-16324955)
chr8 (83-180)||(8489387-8489484)
chr8 (85-180)||(41403775-41403870)
chr8 (85-145)||(43801486-43801546)
[»] chr3 (16 HSPs)
chr3 (83-237)||(43797485-43797639)
chr3 (73-237)||(4041316-4041480)
chr3 (86-224)||(29828827-29828965)
chr3 (84-233)||(53197003-53197152)
chr3 (73-237)||(38499823-38499986)
chr3 (97-232)||(46883550-46883685)
chr3 (97-237)||(8799449-8799589)
chr3 (94-226)||(25349854-25349986)
chr3 (111-236)||(43797685-43797810)
chr3 (111-237)||(20383165-20383294)
chr3 (73-181)||(38500011-38500118)
chr3 (74-180)||(53197175-53197279)
chr3 (83-180)||(43797366-43797463)
chr3 (111-180)||(46883457-46883526)
chr3 (73-177)||(8799321-8799425)
chr3 (19-61)||(25350009-25350053)
[»] chr6 (8 HSPs)
chr6 (83-237)||(22748721-22748875)
chr6 (73-226)||(16125526-16125679)
chr6 (117-237)||(11014369-11014489)
chr6 (111-237)||(24565238-24565361)
chr6 (172-237)||(34851439-34851504)
chr6 (73-180)||(22748592-22748699)
chr6 (106-177)||(33277343-33277414)
chr6 (170-237)||(33277439-33277505)
[»] chr5 (15 HSPs)
chr5 (91-237)||(39634827-39634971)
chr5 (75-236)||(36955428-36955589)
chr5 (73-237)||(31193969-31194133)
chr5 (83-237)||(14076801-14076956)
chr5 (111-237)||(42546391-42546517)
chr5 (160-237)||(32346988-32347065)
chr5 (163-237)||(304144-304218)
chr5 (170-237)||(17370200-17370267)
chr5 (73-180)||(17370071-17370178)
chr5 (73-180)||(31194155-31194262)
chr5 (83-180)||(8754672-8754769)
chr5 (86-180)||(39634993-39635086)
chr5 (83-180)||(32347087-32347184)
chr5 (73-137)||(36955307-36955371)
chr5 (102-180)||(42546539-42546617)
[»] chr7 (16 HSPs)
chr7 (85-237)||(26903447-26903596)
chr7 (83-237)||(35207311-35207462)
chr7 (103-237)||(6408387-6408521)
chr7 (73-237)||(19318280-19318445)
chr7 (97-234)||(48006260-48006397)
chr7 (168-236)||(29474512-29474580)
chr7 (73-237)||(35363322-35363486)
chr7 (83-237)||(2834334-2834486)
chr7 (73-180)||(35207182-35207289)
chr7 (73-188)||(25048205-25048321)
chr7 (111-177)||(35363511-35363577)
chr7 (83-180)||(19318161-19318258)
chr7 (83-180)||(29474603-29474699)
chr7 (83-176)||(39983836-39983924)
chr7 (83-180)||(6408267-6408365)
chr7 (73-137)||(19318452-19318516)
[»] chr4 (26 HSPs)
chr4 (73-234)||(5465857-5466018)
chr4 (102-237)||(9551257-9551392)
chr4 (74-226)||(46993213-46993365)
chr4 (83-226)||(24673866-24674008)
chr4 (73-237)||(11789863-11790030)
chr4 (111-237)||(3556498-3556624)
chr4 (160-227)||(19037813-19037880)
chr4 (111-237)||(26297446-26297572)
chr4 (118-218)||(1024956-1025055)
chr4 (73-215)||(23655222-23655365)
chr4 (168-237)||(32591247-32591316)
chr4 (83-237)||(42475890-42476033)
chr4 (74-178)||(46993072-46993176)
chr4 (160-217)||(21785799-21785854)
chr4 (83-177)||(50544270-50544364)
chr4 (162-223)||(53769532-53769593)
chr4 (96-180)||(11790052-11790136)
chr4 (83-214)||(17914906-17915035)
chr4 (74-145)||(54316054-54316125)
chr4 (86-180)||(1025096-1025190)
chr4 (73-176)||(7061976-7062079)
chr4 (83-144)||(50551478-50551539)
chr4 (73-177)||(9551418-9551522)
chr4 (102-180)||(32591338-32591417)
chr4 (97-138)||(5466081-5466122)
chr4 (111-180)||(17914755-17914824)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 3385608 - 3385444
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||| | ||||| |||  |||||||||||||    
T  3385608 tcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgtggtaaaaaaatatctaacggttgagattttaaatta 3385509  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  3385508 aaaaataaatatttgtttaataaaaatacataataataacaaacaaatcatgttctcttcttctc 3385444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 24883265 - 24883102
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| |||||||||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||||| | ||||| |||  |||||||||||||    
T  24883265 tcgggtatgttccatttaggctaagctccatttactccatttagggtttggatgcaagatatgtggcaaaaaaatatctaacggttgagattttaaatta 24883166  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  24883165 aaaaa-aaatatttgtttaataaaaatacataataataacaaacaaatcatgttctcttcttctc 24883102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 33401141 - 33400990
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatat 184  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||   | ||| ||| ||||||||||||||||||| ||||||    
T  33401141 catttaggctaagctcaatttactttatttaaggtttagatgtaagacatgtggcaaaaaaaaat-taacggttaagattttaaattaaaaaataaatat 33401043  T
Q  185 ttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  33401042 ttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 33400990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 34970253 - 34970118
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatac 201  Q
    |||||||||||||| ||||||||||||||| |||||| |||||| | ||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  34970253 atttactttatttaaggtttggatgtaagacatgtggcaaaaaaatatctaacggttaagattttaaattaaaaaataaatatttgtttaataaaaatac 34970154  T
Q  202 ataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||| ||||||| |||||||||    
T  34970153 ataataataacaaacaacccatgttcccttcttctc 34970118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 27171815 - 27171967
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatat 184  Q
    |||||||||||||||  |||||||  ||||| ||||||||||||||| |||||| |||||| | ||||| |||| |||||||||||||||||||||||||    
T  27171815 catttaggctaagcttcatttactccatttatggtttggatgtaagacatgtggcaaaaaaatatctaacggtcgagattttaaattaaaaaacaaatat 27171914  T
Q  185 ttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||   ||||||||||||||||||||||| |||||||| |||||||||    
T  27171915 ttgtttaacagaaatacataataataacaaacaaatcatgttcccttcttctc 27171967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 13946964 - 13947090
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||||||||||||||||| |||||| |||||| | ||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13946964 atttagggtttggatgtaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatacataataata 13947063  T
Q  211 acaaacaactcatgttctcttcttctc 237  Q
    |||||||| |||||||  |||||||||    
T  13947064 acaaacaaatcatgtttccttcttctc 13947090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 33156741 - 33156588
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||||||||||||  |||||||  |||||||||||||||  |||| |||||| ||||||  | |||| |||  |||||||||||||||||||||||    
T  33156741 tccatttaggctaagctttatttactccatttagggtttggatacaagacatgtggcaaaaaaaat-ctaacggttgagattttaaattaaaaaacaaat 33156643  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||    
T  33156642 atttgtttaataaaaatacataatgataacaaacaaatcatgttcccttcttctc 33156588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 37948802 - 37948956
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||| | ||||||  |||||||  ||||| ||||||||||||||| |||| | |||||| | ||||| |||  |||||||||||||||||||||||    
T  37948802 tccatttaagttaagcttcatttactcaatttaaggtttggatgtaagacatgttgcaaaaaaatatctaacggttgagattttaaattaaaaaacaaat 37948901  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||    
T  37948902 atttgtttaataaaaatacataataataacaaacaaatcatgttcctttcttctc 37948956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 39781074 - 39781232
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| ||| |||||||  |||| |  |||||||| |||||| |||||||||  ||| ||||||||||||||      | |||  |||||||||||||    
T  39781074 tcgggtatgtttcatttagattaagtttcatttacttcatttagagtttggatgcgagacatgtggtaaaaaag------acggttgagattttaaatta 39781167  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||||||||    
T  39781168 aaaaacaaatatttgtttaataaaaatacataataataacaaacaaattatgttcccttcttctc 39781232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 49776823 - 49776983
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||| ||||||||  |||||||  ||||||| |||||||| |||| ||||||||||||| | |  || |||  |||||||||||||    
T  49776823 tcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgtggtaaaaaaatattgaacggttgagattttaaatta 49776922  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttctt 234  Q
    ||| | || |||||||||||| |||||||||||||||||||||||| |||||||| ||||||    
T  49776923 aaagataa-tatttgtttaataaaaatacataataataacaaacaaatcatgttcccttctt 49776983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 237
Target Start/End: Complemental strand, 38338920 - 38338800
Alignment:
Q  117 ggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaac 216  Q
    ||||||||||||||| |||||| |||||| | |||||  ||  | |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  38338920 ggtttggatgtaagacatgtggcaaaaaaatatctaacagttgaaattttaaattaaaaaataaatatttgtttaataaaaatacataataatatcaaac 38338821  T
Q  217 aactcatgttctcttcttctc 237  Q
    || |||||||| ||| |||||    
T  38338820 aaatcatgttcccttattctc 38338800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 43297110 - 43297003
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||| |||||||| |||| |||||  |||||| | ||||| |||  ||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  43297110 atttaggatttggatgcaagacatgtgccaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttatttaataaaaatacacaataata 43297011  T
Q  211 acaaacaa 218  Q
    ||||||||    
T  43297010 acaaacaa 43297003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 42082904 - 42082984
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatac---ataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||| |||||||| |||||||||    
T  42082904 agattttaaattaaaaaacaaatatttgtttaataaaaatacataataataataacaaacaaatcatgttcccttcttctc 42082984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 49777110 - 49777013
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||| ||| ||||| | ||||||||||||||||| |||| |||||  |||||| | ||||| |||  |||||||||||||||||||||    
T  49777110 tccatttaggctaaactccatttattctatttagggtttggatgcaagacatgtgacaaaaaaatatctaacggttgagattttaaattaaaaaacaa 49777013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 33400869 - 33400968
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtgg--taaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||| ||||||||| |||||||  ||||| ||||||||||||||  ||||||   |||||||| ||||||||| ||||||||||| ||||||||||    
T  33400869 tccatttaagctaagctccatttactccatttaaggtttggatgtaaggcatgtggcaaaaaaaagtatctaatggttaagattttaaactaaaaaacaa 33400968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 34970001 - 34970096
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||| ||| ||| |||||||  ||||||| |||||||| |||| ||||||||||||| | ||||| |||  |||||||||||||||||||||    
T  34970001 catttaggttaaactccatttactcaatttaggatttggatgcaagacatgtggtaaaaaaatatctaacggttgagattttaaattaaaaaacaa 34970096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 37949047 - 37948982
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaa 176  Q
    |||||||| |||||||||||| |||||| ||| || | ||||||||| ||||||||||||||||||    
T  37949047 atttagggcttggatgtaagacatgtggcaaacaaatatctaatggttaagattttaaattaaaaa 37948982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 5771922 - 5772014
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaa 175  Q
    ||||||||| |||||||  |||||||  |||||| ||||| ||||||||||| ||| |||||| | ||||| |||  ||||||||||||||||    
T  5771922 tccatttagactaagcttcatttactccatttagagtttgaatgtaagatatatggcaaaaaaatatctaacggttgagattttaaattaaaa 5772014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 38338715 - 38338778
Alignment:
Q  117 ggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| ||| |||||| | ||||| |||  |||||||||||||||||||||    
T  38338715 ggtttggatgtaagatatatggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 38338778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 3385324 - 3385419
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaag---tttctaatggtcaagattttaaattaaaaaa 177  Q
    |||||||||||||||   |||||   ||||||||||||||||||||| |||||| ||||||    | ||||| ||| |||||||||||||||||||    
T  3385324 catttaggctaagcttcgtttaccccatttagggtttggatgtaagacatgtggcaaaaaaaaaatatctaacggttaagattttaaattaaaaaa 3385419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 13947181 - 13947112
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||| |||||||||||||| ||||||||||||| | | ||| |||  | |||||||||||||||||||    
T  13947181 atttagcgtttggatgtaagacatgtggtaaaaaaatatgtaacggttgatattttaaattaaaaaacaa 13947112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 27172058 - 27171989
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||| ||||||||||||||| |||||| |||||| | ||||| |||  ||||||| |||||||||||||    
T  27172058 atttaaggtttggatgtaagacatgtggcaaaaaaatatctaacggttgagattttcaattaaaaaacaa 27171989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 24882975 - 24883047
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaa 145  Q
    ||||||| | |||||||||||||| ||| |||||||  |||||||||||||||| |||| | |||| ||||||    
T  24882975 tcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagacacgtggcaaaaaa 24883047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 21265846 - 21265695
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatt 185  Q
    ||||| ||||||||| ||||||| ||||||||||||||||| |||| |||||| |||||||| |||||||||  ||||||||||||||||||||||||||    
T  21265846 atttaagctaagctccatttactctatttagggtttggatgcaagacatgtggcaaaaaagtatctaatggttgagattttaaattaaaaaacaaatatt 21265747  T
Q  186 tgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  21265746 tgtttaataaaaatacataataataacaaacaaatcatgttctcttcttctc 21265695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 22563214 - 22563378
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  |||||||||||||||| |||| |||||| |||||| | | ||| |||  |||||||||||||    
T  22563214 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatttaacggttgagattttaaatta 22563313  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||||    
T  22563314 aaaaacaaatatttgtttaataaaactacataataataacaaacaaatcatgttcccttcttctc 22563378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 29892820 - 29892967
Alignment:
Q  89 taggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgt 188  Q
    |||| ||||||| ||||| |||||||||| |||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||| |||||||| |    
T  29892820 taggttaagctccatttattttatttaggatttggatgtaagatatgtggaaaaaaa-tatctaatggtcgagattttaaattaaaaaataaatatttat 29892918  T
Q  189 ttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  29892919 ttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 29892967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 20296276 - 20296416
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||| ||||||| || |||||||| |||||||||||||||| |||| || ||| |||||||| || || ||| |||||||||||||||||| | |||    
T  20296276 tccattttggctaagatccatttacttcatttagggtttggatgaaagacatatggcaaaaaagtatccaacggttaagattttaaattaaaaaccgaat 20296375  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  20296376 atttgtttaataaaaatacataataataacaaacaaatcat 20296416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 17200364 - 17200211
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||| |||||||| |||||||  ||||| ||||||||||||||| |||||| |||||| | ||||| | |  | ||||||||||| |||||| ||    
T  17200364 tccatttag-ctaagctccatttactccatttaaggtttggatgtaagacatgtggcaaaaaaatatctaacgattgatattttaaattataaaacagat 17200266  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  17200265 atttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 17200211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 156971 - 157111
Alignment:
Q  92 gctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgttta 191  Q
    ||||||||| |||||||  ||||||| ||||||||||||| || ||| | |||| | ||||| |||  |||||| |||||||||||||||||||||||||    
T  156971 gctaagctccatttactccatttaggatttggatgtaagacat-tggcagaaaaatatctaacggttgagatttgaaattaaaaaacaaatatttgttta 157069  T
Q  192 atgaaaatacataataataacaaacaactcatgttctcttct 233  Q
    || |||||||||||||||||||||||| ||||||||||||||    
T  157070 ataaaaatacataataataacaaacaaatcatgttctcttct 157111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 34645551 - 34645714
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | || ||||||| |||| || |||||||  ||||||||| |||||| |||| |||||| |||||| | ||||| | |  |||||||||||||    
T  34645551 tcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgtggcaaaaaa-tatctaacgattgagattttaaatta 34645649  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  34645650 aaaaacaaatatttatttaataaaaatacataataataacaaacaattcatgttcccttcttctc 34645714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 12232821 - 12232695
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||| ||| |||| |||| |||||| |||||| | |||||  |   |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  12232821 atttaggatttagatgcaagacatgtggcaaaaaaatatctaacaggtgagatattaaattaaaaaacaaatatttgtttaataaaaatacataataata 12232722  T
Q  211 acaaacaactcatgttctcttcttctc 237  Q
    |||||||| |||||||| |||||||||    
T  12232721 acaaacaaatcatgttcccttcttctc 12232695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 13979723 - 13979800
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  13979723 agattttaaattaaaaaataaatatttgtttaataaaaatacataataataacaaacaaattatgttctcttcttctc 13979800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 12232577 - 12232673
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  12232577 tccatttaggctaagctccatttactctatttagggtttggatgtaagacatgtggcaaaaaa-tatctaacggttgagattttaaattaaaaaacaa 12232673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 8237886 - 8237988
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||| || ||||| |||| |||||| |||||||| |||||| ||  |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  8237886 atttaggattaggatgcaagacatgtggcaaaaaagtatctaatagttgagattttaaattaaaa-acaaatatttgtttaataaaaatacataataata 8237984  T
Q  211 acaa 214  Q
    ||||    
T  8237985 acaa 8237988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 17200082 - 17200189
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||| |||||| |||||||  ||||||| ||||||||||||| |||||| ||| || | |||||||||  |||||||||||||    
T  17200082 tcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgtggcaaataaatatctaatggttgagattttaaatta 17200181  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  17200182 aaaaacaa 17200189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 21265577 - 21265673
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||| ||||||||||||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  21265577 tccatttagactaagctcaatttactccatttagggtttggatgcaagacatgtggcaaaaaa-tatctaacggttgagattttaaattaaaaaacaa 21265673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 29893094 - 29892989
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||  | |||| | ||||| |||  |||||||||||||    
T  29893094 tcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgtg--acaaaaatatctaacggttgagattttaaatta 29892997  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  29892996 aaaaacaa 29892989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 22563507 - 22563400
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||| ||| |||||||  ||||||| |||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  22563507 tcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 22563408  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  22563407 aaaaacaa 22563400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 4371458 - 4371551
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagatttt 166  Q
    ||||||| | |||||||||||||||||| |||||||  |||||||||||||||| |||| |||||| |||||| | |||||||||  |||||||    
T  4371458 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaatggttgagatttt 4371551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 34645843 - 34645736
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    |||||||  ||||||||||||| | ||| ||||| |  ||||||||||||||||||||| |||||| || ||| | ||||| |||  |||||||||||||    
T  34645843 tcgggtatattccatttaggcttaactccatttattccatttagggtttggatgtaagacatgtggcaagaaaatatctaacggttgagattttaaatta 34645744  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  34645743 aaaaacaa 34645736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 20296700 - 20296606
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||||||||| |||||||  ||||| |  |||||||||||| |||||| |||||| | || || |||  |||||||||||||||||||||    
T  20296700 atttaggctaagctccatttactccatttaagaattggatgtaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaa 20296606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 33491455 - 33491417
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggttt 121  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  33491455 tccatttaggctaagctccatttactctatttagggttt 33491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 14999185 - 14999339
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||| |||||| || ||||| |||||| ||  |||||||||||||||||||||||    
T  14999185 tccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgtggcaataaagtatctaatagttgagattttaaattaaaaaacaaat 14999284  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| |||||||||||||||||||||||| | |||||| |||||||||    
T  14999285 atttgtttaataaaaatacataataataacaaacaaattatgttcccttcttctc 14999339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 41722124 - 41721960
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||| | ||||||| |||| |||| | |||||| | ||||| ||| |||||||||||| |    
T  41722124 tcgggtatgtttcatttaggctaagctctatttactttatttagagcttggatgcaagacatgttgcaaaaaaatatctaacggttaagattttaaataa 41722025  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  41722024 aaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 41721960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 73 - 226
Target Start/End: Complemental strand, 43801768 - 43801615
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| |||||||||||||||||||| |||||||  |||||| ||||||||| ||||||||||| |||||| | |||||  ||  | |||||||||||    
T  43801768 tcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgtggcaaaaaaatatctaacagttgaaattttaaatta 43801669  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgtt 226  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| |||||||    
T  43801668 aaaaactaatatttgtttaataaaaatacataataataacaaacaaatcatgtt 43801615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 6911297 - 6911162
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatac 201  Q
    |||||||  |||||||||||||||| |||| |||||| |||||| | || || |||  |||||||||||||||||||||||||||||||||| |||||||    
T  6911297 atttactccatttagggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatac 6911198  T
Q  202 ataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||| |||||||| |||||||| |||||||||    
T  6911197 ataataattacaaacaaatcatgttcccttcttctc 6911162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 16325131 - 16324977
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgt--ggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||| || || ||| |||||||  |||||||||||||||| |||| ||||  ||||||||| | ||||| |||  |||||||||||||||||||||||    
T  16325131 catttaagccaaactccatttactccatttagggtttggatgcaagacatgtatggtaaaaaaatatctaacggttgagattttaaattaaaaaacaaat 16325032  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||| || |||||||||||||||||||||||| |||||||| |||||||||    
T  16325031 atttgtttgataaaaatacataataataacaaacaaatcatgttcccttcttctc 16324977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 41404047 - 41403892
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaa-aaagtttctaatggtcaagattttaaattaaaaaacaaa 181  Q
    |||||||||| |||| |||||||||| ||||||||||||||||| |||| |||||  ||| ||| | | ||| |||  |||||||||||| |||||||||    
T  41404047 tccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgtgacaaacaaaatatttaacggttgagattttaaatttaaaaacaaa 41403948  T
Q  182 tatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||| |||||||||||||||||||||||| |||||||  |||||||||    
T  41403947 tatttgtttaataaaaatacataataataacaaacaaatcatgtttccttcttctc 41403892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 40621795 - 40621682
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatac 201  Q
    |||||||| |||||||||||| |||||| | ||||||||||||| | ||||| |||  |||||||||||||||||||||||||||||||||| |||||||    
T  40621795 atttacttcatttagggtttgaatgtaaaacatgtggtaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatac 40621696  T
Q  202 ataataataacaaa 215  Q
    ||||||||||||||    
T  40621695 ataataataacaaa 40621682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 22781325 - 22781189
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaa 196  Q
    |||| |||||||  |||||||||||||||| ||||||||||  ||||||  || ||| |||  |||||||||||||||||||||||||||||||||| ||    
T  22781325 gctccatttactcaatttagggtttggatgcaagatatgtgacaaaaaatatt-taacggttgagattttaaattaaaaaacaaatatttgtttaat-aa 22781228  T
Q  197 aatacataataataacaaacaactcatgttctcttcttct 236  Q
    |||| ||||||||||||||||| |||||||| ||||||||    
T  22781227 aatatataataataacaaacaa-tcatgttcccttcttct 22781189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 8489582 - 8489509
Alignment:
Q  161 gattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttctt 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||    
T  8489582 gattttaaattaaaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcatgttcccttctt 8489509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 6911043 - 6911140
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||| |||||| |||||| | ||||| | |  |||||||||||||||||||||    
T  6911043 tccatttaggctaagctccatttactccatttagggtttggatgtaagacatgtggcaaaaaaatatctaacgattgagattttaaattaaaaaacaa 6911140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 15009155 - 15009057
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatt 171  Q
    ||||||| | |||||||||||||||||  |||||||  ||||||||||||||||||||| |||||| |||||||| |||||  || |||||||||||||    
T  15009155 tcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgtggcaaaaaagtatctaacagttaagattttaaatt 15009057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 16324858 - 16324955
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||||||||| |  |||||||||||||||| |||| |||||  |||||| | ||||| |||  |||||||||||||||||||||    
T  16324858 tccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgtgacaaaaaaatatctaacggttgagattttaaattaaaaaacaa 16324955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 8489387 - 8489484
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||| ||||||  ||||| |  ||||||||||||||||||||| |||||| |||||| | ||||| | |  |||||||||||||||||||||    
T  8489387 tccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgtggcaaaaaaatatctaacgattgagattttaaattaaaaaacaa 8489484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 41403775 - 41403870
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||  |||||||||||||||  ||||||| ||| |||||||||||||||  |||||| | |||||  ||  |||||||||||||||||||||    
T  41403775 catttagattaagctcaatttactccatttaggattttgatgtaagatatgtgacaaaaaaatatctaacagttgagattttaaattaaaaaacaa 41403870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 43801486 - 43801546
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaa 145  Q
    |||||||||||| ||  |||||||  |||||| |||||||||||||| |||||| ||||||    
T  43801486 catttaggctaaacttcatttactccatttagagtttggatgtaagacatgtggcaaaaaa 43801546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 43797639 - 43797485
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| |||| |||||  |||||||| || || ||| |||||||||||||||||| |||||    
T  43797639 tccatttaggctaagatccatttactctatttagggtttggatgaaagacatgtgacaaaaaagtatccaacggttaagattttaaattaaaaaccaaat 43797540  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  43797539 atttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 43797485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 4041480 - 4041316
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||  |||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  4041480 tcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 4041381  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||  |||| |||||||||    
T  4041380 aaaaacaaatatttgtttactaaaaatacataataataacaaacaaatcgagttcccttcttctc 4041316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 29828965 - 29828827
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatt 185  Q
    ||||| ||||||||| ||||| |  ||||||| |||||||||||||||||||| |||||| | ||||| |||  ||||||||||||||||||||||||||    
T  29828965 atttaagctaagctccatttattccatttaggatttggatgtaagatatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatt 29828866  T
Q  186 tgtttaatgaaaatacataataataacaaacaactcatg 224  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29828865 tgtttaataaaaatacataataataacaaacaaatcatg 29828827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 53197003 - 53197152
Alignment:
Q  84 ccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaata 183  Q
    ||||||| ||||| ||  ||||||| ||||||||||||||||| || | |||||| |||||| | ||||| |||  ||||||||||||||||||||||||    
T  53197003 ccatttaagctaaacttcatttactctatttagggtttggatgcaaaacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaata 53197102  T
Q  184 tttgtttaatgaaaatacataataataacaaacaactcatgttctcttct 233  Q
    ||| |||||| |||||||||||||||||||||||| ||||||||||||||    
T  53197103 tttatttaataaaaatacataataataacaaacaaatcatgttctcttct 53197152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 38499823 - 38499986
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  |||||||||||||||  |||| |||||| ||||||  | |||| |||  |||||||||| ||    
T  38499823 tcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgtggcaaaaaaaat-ctaacggttgagattttaaacta 38499921  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  38499922 aaaaccaaatatttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 38499986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 46883685 - 46883550
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaa 196  Q
    |||| |||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||||||||||||||||||||||| ||    
T  46883685 gctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaa 46883586  T
Q  197 aatacataataataacaaacaactcatgttctcttc 232  Q
    |||||||||||||||||||||| |||||||| ||||    
T  46883585 aatacataataataacaaacaaatcatgttcccttc 46883550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 8799589 - 8799449
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaa 196  Q
    |||| |||||||  ||||||||||| |||| |||| |||||| |||||| | | ||| |||  |||||||||||||||||||||||||||||||||| ||    
T  8799589 gctccatttactccatttagggtttagatgcaagacatgtggcaaaaaaatatataacggttgagattttaaattaaaaaacaaatatttgtttaataaa 8799490  T
Q  197 aatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||||||| |||||||| |||||||||    
T  8799489 aatacataataataacaaacaaatcatgttcccttcttctc 8799449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 25349986 - 25349854
Alignment:
Q  94 taagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaat 193  Q
    ||||||| ||||| | |||||||||||||||||||||| |||||  ||||||   ||||| |||  |||||||||||||||||| ||||||||||||||     
T  25349986 taagctccatttattctatttagggtttggatgtaagacatgtgccaaaaaaacatctaacggttgagattttaaattaaaaaataaatatttgtttaac 25349887  T
Q  194 gaaaatacataataataacaaacaactcatgtt 226  Q
     ||||||||||||||||||||||||||||||||    
T  25349886 aaaaatacataataataacaaacaactcatgtt 25349854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 43797685 - 43797810
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||| ||||||||||||||| |||||| |||||| | |||||||||  | |||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  43797685 atttaaggtttggatgtaagacatgtggcaaaaaaatatctaatggttgaaattttaaattaaaaaataaatatttgtttaataaaattacataataata 43797784  T
Q  211 acaaacaactcatgttctcttcttct 236  Q
    |||||||| | |||||||||| ||||    
T  43797785 acaaacaaattatgttctctttttct 43797810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 20383294 - 20383165
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa--atat-ttgtttaatgaaaatacataata 207  Q
    |||||| ||||||||| ||||  |||||||||||||| ||||| |||  |||||||||||||||||| ||  | || || |||||| |||||||||||||    
T  20383294 atttagagtttggatgaaagacgtgtggtaaaaaagtatctaacggttgagattttaaattaaaaaaaaataaaatattatttaataaaaatacataata 20383195  T
Q  208 ataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| || ||||| |||||||||    
T  20383194 ataacaaacaaatcttgttcccttcttctc 20383165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 38500118 - 38500011
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  | ||||||||||||||||||| |||||| |||||| | |||||  ||  |||||||||||||    
T  38500118 tcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgtgg-aaaaaaatatctaacagttgagattttaaatta 38500020  T
Q  173 aaaaacaaa 181  Q
    |||||||||    
T  38500019 aaaaacaaa 38500011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 53197279 - 53197175
Alignment:
Q  74 cgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaa 173  Q
    |||||| | |||||||||||||||||  |||||||  |||||||||||||||| |||| |||||| |||||| | |||||  ||||||||||||||||||    
T  53197279 cgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtggcaaaaaa-tatctaa-cgtcaagattttaaattaa 53197182  T
Q  174 aaaacaa 180  Q
    |||||||    
T  53197181 aaaacaa 53197175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 43797366 - 43797463
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| |||||||  ||||| |||||||||| |||| |||||| |||||| | || || |||  |||||||||||||||||||||    
T  43797366 tccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaa 43797463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 46883457 - 46883526
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||||||||||||||| |||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  46883457 atttagggtttggatgtaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 46883526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 8799321 - 8799425
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||||| |||| |||||||  |||||||||||||||| |||| |||||| |||||  | |||||  ||  |||||||||||||    
T  8799321 tcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgtggcaaaaatatatctaacagttgagattttaaatta 8799420  T
Q  173 aaaaa 177  Q
    |||||    
T  8799421 aaaaa 8799425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 25350053 - 25350009
Alignment:
Q  19 aatatgagataccaacattaccaccct--catcatggtagcatct 61  Q
    |||||||||||||||||||||||||||  || |||||||||||||    
T  25350053 aatatgagataccaacattaccaccctcacaccatggtagcatct 25350009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 22748875 - 22748721
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||| ||||| || |||||||  ||||||| |||||||| |||| ||||||||||||||  || || ||| |||||||||||||||||| |||||    
T  22748875 tccatttagactaagatccatttactccatttaggatttggatgaaagacatgtggtaaaaaagcatccaacggttaagattttaaattaaaaatcaaat 22748776  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  22748775 atttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 22748721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 16125526 - 16125679
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||| ||  ||||| || |||||||||||||||| |||| |||||| |||||| | | ||| | |  | |||||||||||    
T  16125526 tcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgtggcaaaaaaatatttaacgattgaaattttaaatta 16125625  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgtt 226  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  16125626 aaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcatgtt 16125679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 11014369 - 11014489
Alignment:
Q  117 ggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaac 216  Q
    ||||||||||||||| ||||| ||||||| | | |||  ||  |||||||||||||||||  ||||||||||||||| |||| |||||||||||||||||    
T  11014369 ggtttggatgtaagacatgtgataaaaaaatatttaacagttgagattttaaattaaaaagtaaatatttgtttaataaaaacacataataataacaaac 11014468  T
Q  217 aactcatgttctcttcttctc 237  Q
    |||| |||||| |||||||||    
T  11014469 aacttatgttcccttcttctc 11014489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 24565361 - 24565238
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    ||||||||||| ||||||||| |||||| ||||||   ||||| |||  |||||||||||||||||  ||| | ||||||||| ||||||||||||||||    
T  24565361 atttagggtttagatgtaagacatgtggcaaaaaaacatctaacggttgagattttaaattaaaaa--aaaaaattgtttaataaaaatacataataata 24565264  T
Q  211 acaaacaactcatgttctcttcttctc 237  Q
    ||||| || | |||||| |||||||||    
T  24565263 acaaataaat-atgttcccttcttctc 24565238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 34851504 - 34851439
Alignment:
Q  172 aaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| || |||||||| |||||||||    
T  34851504 aaaaaacaaatatgtgtttaataaaaatacataataataacaaataaatcatgttcccttcttctc 34851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 22748592 - 22748699
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | || |||||||||| |||| |||||||  ||||| | |||||||| |||| |||||| |||||| | || || |||  |||||||||||||    
T  22748592 tcgggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaatta 22748691  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  22748692 aaaaacaa 22748699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 33277343 - 33277414
Alignment:
Q  106 actttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaa 177  Q
    |||| |||||||||||||||| |||| |||||| |||||| | | |||||||  ||||||||||||||||||    
T  33277343 acttcatttagggtttggatgcaagacatgtggcaaaaaaatatttaatggttgagattttaaattaaaaaa 33277414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 33277505 - 33277439
Alignment:
Q  170 ttaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||||||||| || |||||||||||| | |||||| ||||||||  ||||||||    
T  33277505 ttaaaaaacaaatatttgtttaattaagatacataataat-agaaacaaatcatgttccattcttctc 33277439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 39634827 - 39634971
Alignment:
Q  91 ggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgttt 190  Q
    |||||||||| |||||||| ||| ||||||||||||||||| |||||| ||||||  | |||| |||  |||||||||||||||||||||||||||||||    
T  39634827 ggctaagctccatttacttcatt-agggtttggatgtaagacatgtggcaaaaaaaat-ctaacggttgagattttaaattaaaaaacaaatatttgttt 39634924  T
Q  191 aatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  39634925 aataaaaatacataataataacaaacaaatcatgttctcttcttctc 39634971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 36955589 - 36955428
Alignment:
Q  75 gggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaa 174  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||||||| || |||| |||||| |||||| | ||||| |||   ||||||||||||||    
T  36955589 gggtacgctccatttaggctaagctctatttactctatttagggtttggttgcaagacatgtggcaaaaaaatatctaacggttgcgattttaaattaaa 36955490  T
Q  175 aaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttct 236  Q
    |||||||||| |  ||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  36955489 aaacaaatatctcattaataaaaatacataataataacaaacaaatcatgttcccttcttct 36955428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 31193969 - 31194133
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  ||||| |||||||||| |||| |||||| |||||| | || || |||  |||||||||||||    
T  31193969 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaatta 31194068  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||  ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  31194069 aaaactaaatatttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 31194133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 14076956 - 14076801
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||| || |||||||  |||||||||||||||| |||| |||||| |||||| | | ||| |||  |||||||||||||||||||||||    
T  14076956 tccatttaggctaagttctatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatttaacggttgagattttaaattaaaaaacaaat 14076857  T
Q  183 a-tttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    | ||| |||||| |||||||||||||||||||||||| | |||||| |||||||||    
T  14076856 attttttttaataaaaatacataataataacaaacaaattatgttcccttcttctc 14076801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 237
Target Start/End: Original strand, 42546391 - 42546517
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    |||||||||||||||| |||| || ||| |||||| | ||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42546391 atttagggtttggatgcaagacatttggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatacataataata 42546490  T
Q  211 acaaacaactcatgttctcttcttctc 237  Q
    |||||||| ||||||||  ||||||||    
T  42546491 acaaacaaatcatgttccattcttctc 42546517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 32346988 - 32347065
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||    
T  32346988 agattttaaattaaaaaacaaatatttgtttaataaaaatatataataataacaaacaaatcatgttcccttcttctc 32347065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 304218 - 304144
Alignment:
Q  163 ttttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  304218 ttttaaattaaaaaacaaatatttatttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 304144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 17370267 - 17370200
Alignment:
Q  170 ttaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||    
T  17370267 ttaaaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttctc 17370200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 17370071 - 17370178
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||| ||||| ||| |||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  17370071 tcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 17370170  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  17370171 aaaaacaa 17370178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 31194262 - 31194155
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||| |||||||  ||||| |||||||||| |||| |||||| |||||| | || || |||  |||||||||||||    
T  31194262 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaatta 31194163  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  31194162 aaaaacaa 31194155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 8754672 - 8754769
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||| |||| ||| ||||||| ||||||||||||||||| |||| |||||| ||||||   ||||| |||  | |||||||||||||||||||    
T  8754672 tccatttagactaaactccatttactctatttagggtttggatggaagacatgtggcaaaaaaagatctaacggttgaaattttaaattaaaaaacaa 8754769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 39635086 - 39634993
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||||||||  || ||||  ||||||||||||||||||||||||| || |||||| | | ||| |||  |||||||||||||||||||||    
T  39635086 atttaggctaagcttcatatactc-atttagggtttggatgtaagatatgcggcaaaaaaatatgtaacggttgagattttaaattaaaaaacaa 39634993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 32347184 - 32347087
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||||| | |||||  ||||| ||||||||||||||| |||||  |||||| | |||||  ||  |||| ||||||||||||||||    
T  32347184 tccatttaggctaagctccaattactccatttaaggtttggatgtaagacatgtgacaaaaaaatatctaactgtttagatcttaaattaaaaaacaa 32347087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 36955307 - 36955371
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtg 137  Q
    ||||||| | |||||||||||||||||  |||||||  |||||||||||||||| |||| |||||    
T  36955307 tcgggtaggctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgtg 36955371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 42546617 - 42546539
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||  |||||||||||||||| |||| |||||  ||||||   ||||| |||  |||||||||||||||||||||    
T  42546617 atttactccatttagggtttggatgcaagacatgtgacaaaaaaacatctaacggttgagattttaaattaaaaaacaa 42546539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 85 - 237
Target Start/End: Original strand, 26903447 - 26903596
Alignment:
Q  85 catttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatat 184  Q
    |||||||||||||||  |||||||| ||||||||||||  | ||| | |||||| |||||||| || || |||  |||||||||||||||||||||||||    
T  26903447 catttaggctaagcttcatttacttcatttagggtttg--tttaa-acatgtggcaaaaaagtatcgaacggttgagattttaaattaaaaaacaaatat 26903543  T
Q  185 ttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  26903544 ttgtttaataaaaatacataataataacaaacaaatcatgttctcttcttctc 26903596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 35207462 - 35207311
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||||||||| ||| |||||||  |||||||||||||||| |||| |||||| ||||||  |   || |||| |||||||||||||||||||||||    
T  35207462 tccatttaggctaaactccatttactccatttagggtttggatgcaagacatgtggcaaaaaaaat---aacggtcgagattttaaattaaaaaacaaat 35207366  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| |||||||||||||||||||||| | |||||||| |||||||||    
T  35207365 atttgtttaataaaaatacataataataacaaactaatcatgttcccttcttctc 35207311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 6408521 - 6408387
Alignment:
Q  103 tttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaataca 202  Q
    ||||||| |||||||||||||||| |||| |||||| |||||| | ||||| |||  ||||||||||||||||||||||||||||| |||| ||||||||    
T  6408521 tttacttcatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtctaataaaaataca 6408422  T
Q  203 taataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||| |||| ||| |||||||||    
T  6408421 taataataacaaacaaatcatattcccttcttctc 6408387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 19318445 - 19318280
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||||||  |||||||  ||||| ||||| |||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  19318445 tcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 19318346  T
Q  173 a-aaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    | |||||||||||||||||||| || ||||||||||||||||||||| ||||||||  ||||||||    
T  19318345 agaaaacaaatatttgtttaataaacatacataataataacaaacaaatcatgttcctttcttctc 19318280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 234
Target Start/End: Complemental strand, 48006397 - 48006260
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaa 196  Q
    |||| ||||||| |||||||| |||||||| || | |||||| |||||| | | ||| |||  |||||||||||||||||| ||||||||||||||||||    
T  48006397 gctccatttactctatttaggatttggatgcaaaacatgtggcaaaaaaatatttaacggttgagattttaaattaaaaaataaatatttgtttaatgaa 48006298  T
Q  197 aatacataataataacaaacaactcatgttctcttctt 234  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  48006297 aatacataataataacaaacaaatcatgttcccttctt 48006260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 29474512 - 29474580
Alignment:
Q  168 aattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttct 236  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||    
T  29474512 aattaaaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcatgttcccttcttct 29474580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 35363322 - 35363486
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||||||| |  |||||||  |||||| |||| |||| || | |||||| ||||||   | ||| |||  |||||||||||||    
T  35363322 tcgggtatgctccatttaggctaagtttcatttactccatttagagtttagatgcaacacatgtggcaaaaaaaaatataacggttgagattttaaatta 35363421  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||| || |||||||||||| |||||||||||||||||||||||| | |||||| ||| |||||    
T  35363422 aaaaataagtatttgtttaataaaaatacataataataacaaacaaattatgttccctttttctc 35363486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 2834486 - 2834334
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||| || ||||| |  |||||||||||||||  || | |||||| |||| | | | |||  ||  ||||||||||||||||||  |||    
T  2834486 tccatttaggctaagttccatttattccatttagggtttggatacaaaacatgtggcaaaataatatgtaacagttgagattttaaattaaaaaa--aat 2834389  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| |||||||||||||||||||||||| |||||||  |||||||||    
T  2834388 atttgtttaataaaaatacataataataacaaacaaatcatgtttccttcttctc 2834334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 35207182 - 35207289
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    |||||||  ||||||||||||||||||| |||||||  |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||    
T  35207182 tcgggtatattccatttaggctaagctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 35207281  T
Q  173 aaaaacaa 180  Q
    ||||||||    
T  35207282 aaaaacaa 35207289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 25048321 - 25048205
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagt-ttctaatggtcaagattttaaatt 171  Q
    ||||||| | |||||||||||||||||| |||||||| ||||||| |||||||| |||| |||||  |||||| | ||| || |||  ||||||||||||    
T  25048321 tcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgtgacaaaaaaatattcaaacggttgagattttaaatt 25048222  T
Q  172 aaaaaacaaatatttgt 188  Q
    |||||| ||||||||||    
T  25048221 aaaaaataaatatttgt 25048205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 35363577 - 35363511
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaa 177  Q
    ||||||| |||||| ||||||||||||| |||||| | |||||||||  ||||||||||||||||||    
T  35363577 atttaggatttggaggtaagatatgtggcaaaaaaatatctaatggttgagattttaaattaaaaaa 35363511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 19318161 - 19318258
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||| ||||| | |||||||  |||||| |||||||||||||| |||||  |||||| | ||||| | |  |||||||||||||||||||||    
T  19318161 tccatttaggttaagcgccatttactccatttagagtttggatgtaagacatgtgacaaaaaaatatctaacgattgagattttaaattaaaaaacaa 19318258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 29474699 - 29474603
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||| ||| ||||||| ||||||| | ||||||| |||| |||| | |||||| | ||||| |||  | |||||||||||||||||||    
T  29474699 tccatttaggctaaactccatttactctatttagagcttggatgcaagacatgtag-aaaaaaatatctaacggttgaaattttaaattaaaaaacaa 29474603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 39983924 - 39983836
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaa 176  Q
    ||||||||||| |||||| |||||||  |||||||||||||||| |||| |||||    ||||| |||||| |||  |||||||||||||||||    
T  39983924 tccatttaggcgaagctccatttactccatttagggtttggatgcaagacatgtg----aaaag-ttctaacggttgagattttaaattaaaaa 39983836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 6408267 - 6408365
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtt-tctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||||||| |||||||| |||||||| ||||||| |||| |||  |||||||||| ||||||  | | ||| |||  |||||||| ||||||||||||    
T  6408267 tccatttagtctaagctccatttacttcatttaggatttgaatggcagatatgtggcaaaaaaaatatgtaacggttgagattttatattaaaaaacaa 6408365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 19318516 - 19318452
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtg 137  Q
    ||||||| | |||||||||||||||||| |||||||  ||||| ||||| |||| |||| |||||    
T  19318516 tcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaagacatgtg 19318452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 5465857 - 5466018
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||||||| |  |||||||| ||||||||||| ||||||||| |||||| |||||| | ||||| |||  |||||||||||||    
T  5465857 tcgggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgtggcaaaaaaatatctaacggttgagattttaaatta 5465956  T
Q  173 aaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttctt 234  Q
    |||||||||||||| |||||| | ||||||||||||||||||| || |||||||| ||||||    
T  5465957 aaaaacaaatatttatttaataataatacataataataacaaataaatcatgttcccttctt 5466018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 9551257 - 9551392
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatac 201  Q
    |||| ||| ||||| | |||||||| |||| |||||  |||||| | ||||| |||  |||||||||||||||||||||||||||||||||| |||||||    
T  9551257 atttgcttcatttaagatttggatgcaagacatgtgtcaaaaaaatatctaacggttgagattttaaattaaaaaacaaatatttgtttaataaaaatac 9551356  T
Q  202 ataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||||||||| |||||||| |||||||||    
T  9551357 ataataataacaaacaaatcatgttcccttcttctc 9551392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 46993365 - 46993213
Alignment:
Q  74 cgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaa 173  Q
    |||||| | ||||||||  ||||||||||||||||  ||||| | |||| ||| ||||||| | | |||||| | ||||| | |  ||||||||||||||    
T  46993365 cgggtatgctccatttaaactaagctcaatttactccatttaagatttgaatgcaagatatttagcaaaaaaatatctaacgattgagattttaaattaa 46993266  T
Q  174 aaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgtt 226  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  46993265 aaaacaaatatttgtttaataaaaatacataataataacaaacaaatcatgtt 46993213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 24674008 - 24673866
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||||||||| ||  ||||||| ||||||| |||||||||||||| || ||  |||||| | ||||| | |  |||||||||||||||||||||||    
T  24674008 tccatttaggctaaacttcatttactctatttagagtttggatgtaagacatatgacaaaaaaatatctaacgattgagattttaaattaaaaaacaaat 24673909  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgtt 226  Q
    |||| |||||| |||||||||||||||||||||||| |||||||    
T  24673908 atttatttaat-aaaatacataataataacaaacaaatcatgtt 24673866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 11789863 - 11790030
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||||| |||||  |||||||  ||||||||||| |||| ||||||||||| |||||| | |  || |||  |||||||||||||    
T  11789863 tcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgtggcaaaaaaatattcaacggttgagattttaaatta 11789962  T
Q  173 aaaaacaaatatttgtttaatgaaaatac---ataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||||||||||||||  ||||||   ||||||||||||||||| |||||| | |||||||||    
T  11789963 aaaaacaaatatttgtttaatagaaatacataataataataacaaacaaatcatgtccccttcttctc 11790030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 3556624 - 3556498
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatt-aaaaaacaaatatttgtttaatgaaaatacataataat 209  Q
    |||||||||||||||| |||| |||||| |||||| | ||||| |||  ||||||||| |  |||||||||||||||||||||| |||||| ||||||||    
T  3556624 atttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaattagaaaaaacaaatatttgtttaataaaaatatataataat 3556525  T
Q  210 aacaaacaactcatgttctcttcttctc 237  Q
    ||||||||| |||||||| |||||||||    
T  3556524 aacaaacaaatcatgttc-cttcttctc 3556498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 19037813 - 19037880
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttc 227  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  19037813 agattttaaattaaaaaacaaatatttgtttaataaaaatacataataataacaaacaaatcatgttc 19037880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 26297572 - 26297446
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataata 210  Q
    |||||| ||||||||| ||||||||||  |||||| | |||||  ||  |||||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  26297572 atttagagtttggatgcaagatatgtgacaaaaaaatatctaacagttgagattttaaattaaaaaataaatattcgtttaataaaaatacataataata 26297473  T
Q  211 acaaacaactcatgttctcttcttctc 237  Q
    |||||||| | |||||  |||||||||    
T  26297472 acaaacaaattatgtttccttcttctc 26297446  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 1024956 - 1025055
Alignment:
Q  118 gtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaaca 217  Q
    ||||||||| ||||||||||| |||||| | ||||| |||  | ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||    
T  1024956 gtttggatgcaagatatgtggcaaaaaa-tgtctaacggttgatattttaaattaaaaaattaatatttgtttaataaaaatacataataataacaaaca 1025054  T

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Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 23655365 - 23655222
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaa-agtttctaatggtcaagattttaaatt 171  Q
    ||||||| | |||||||||| ||||||  ||||| |  ||||||||||| |||| |||| |||||| ||||| |   ||||| |||  | ||||||||||    
T  23655365 tcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgtggcaaaaagaaaatctaacggttgaaattttaaatt 23655266  T
Q  172 aaaaaacaaatatttgtttaatgaaaatacataataataacaaa 215  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  23655265 aaaaatcaaatatttgtttaataaaaatacataataataacaaa 23655222  T

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Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 32591247 - 32591316
Alignment:
Q  168 aattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||  ||||||||    
T  32591247 aattaaaaaataaatatttgtttaataaaaatacataataataacaaacaaatcatgctcctttcttctc 32591316  T

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Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 42475890 - 42476033
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    |||||||||||||||||  ||||||| ||||||||||||||||| |||| | |||| |||||| | ||||| | |  ||||||||||           ||    
T  42475890 tccatttaggctaagcttcatttactctatttagggtttggatgcaagacacgtggcaaaaaaatatctaacgattgagattttaaa-----------at 42475978  T
Q  183 atttgtttaatgaaaatacataataataacaaacaactcatgttctcttcttctc 237  Q
    ||||||||||| ||||||||||||||||| ||| || |||||||| |||||||||    
T  42475979 atttgtttaataaaaatacataataataaaaaataaatcatgttcccttcttctc 42476033  T

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Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 46993072 - 46993176
Alignment:
Q  74 cgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaa 173  Q
    |||||| | |||||||||| ||||||| ||||| | ||||||||||||||||| ||||||||| | |||||| | ||||| |||  |||| |||||||||    
T  46993072 cgggtatgctccatttaggttaagctccatttattctatttagggtttggatgcaagatatgtagcaaaaaaatatctaacggttgagatgttaaattaa 46993171  T
Q  174 aaaac 178  Q
    |||||    
T  46993172 aaaac 46993176  T

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Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 21785799 - 21785854
Alignment:
Q  160 agattttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaaca 217  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  21785799 agattttaaattaaaaaataaatatttgtttaat--aaatacataataataacaaaca 21785854  T

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Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 177
Target Start/End: Original strand, 50544270 - 50544364
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaa 177  Q
    |||||||||||||||||| ||||| | ||||||||||||||||| |||| |||||| |||||  | ||||| ||   ||||||||||||||||||    
T  50544270 tccatttaggctaagctccatttattctatttagggtttggatgcaagacatgtggcaaaaagatatctaacggatgagattttaaattaaaaaa 50544364  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 53769593 - 53769532
Alignment:
Q  162 attttaaattaaaaaacaaatatttgtttaatgaaaatacataataataacaaacaactcat 223  Q
    ||||||||| |||||| |||||||| |||||| |||||||||||||||||||||||| ||||    
T  53769593 attttaaataaaaaaataaatatttatttaataaaaatacataataataacaaacaaatcat 53769532  T

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Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 11790136 - 11790052
Alignment:
Q  96 agctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    ||||| ||||| || |||||||||||||||| |||| |||||| |||||| | ||||| |||  |||||||||||||||||||||    
T  11790136 agctccatttatttcatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 11790052  T

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Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 17915035 - 17914906
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaaat 182  Q
    ||||||||||||||| || |||||||  |||||  ||||||||| |||| |||||| |||||| | || || |||  | |||||||||||||||  |||     
T  17915035 tccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgtggcaaaaaaatatccaacggttgatattttaaattaaaaa--aaaa 17914938  T
Q  183 atttgtttaatgaaaatacataataataacaa 214  Q
    |||||||||||  ||||||||||||| |||||    
T  17914937 atttgtttaatagaaatacataataacaacaa 17914906  T

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Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 54316125 - 54316054
Alignment:
Q  74 cgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaa 145  Q
    |||||| | |||||||||||||||||| |||||||  |||||||||||||||| |||| |||||| ||||||    
T  54316125 cgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgtggcaaaaaa 54316054  T

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Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 1025190 - 1025096
Alignment:
Q  86 atttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||| |||||||||  |||||||  |||||| ||||||||| |||||||||| ||||||| | | ||| |||  |||||||||||||||||||||    
T  1025190 attttggctaagcttcatttactcaatttagagtttggatgcaagatatgtgataaaaaaatatataacggttgagattttaaattaaaaaacaa 1025096  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 7061976 - 7062079
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | |||||||||||||| ||| |||||||  ||||| |||||||||| |||| |||||| |||||| | | ||| |||  ||||||| |||||    
T  7061976 tcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgtggcaaaaaaatatataacggttgagatttttaatta 7062075  T
Q  173 aaaa 176  Q
    ||||    
T  7062076 aaaa 7062079  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 50551539 - 50551478
Alignment:
Q  83 tccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaa 144  Q
    |||||||||||||| ||  |||||||  ||||| |||||||||||||||||||||| |||||    
T  50551539 tccatttaggctaaactttatttactccatttaaggtttggatgtaagatatgtggcaaaaa 50551478  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 9551522 - 9551418
Alignment:
Q  73 tcgggtacgttccatttaggctaagctcaatttactttatttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaatta 172  Q
    ||||||| | ||||||||| |||| ||| |||||||  |||||||| ||||||| |||| || ||| |||||| | ||| | |||  |||||||||||||    
T  9551522 tcgggtatgctccatttagactaaactccatttactccatttagggcttggatggaagacatttggcaaaaaaatatctcacggttgagattttaaatta 9551423  T
Q  173 aaaaa 177  Q
    |||||    
T  9551422 aaaaa 9551418  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 32591417 - 32591338
Alignment:
Q  102 atttactttatttagggtttggatgtaagatatgtggtaaaaaagtt-tctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||  ||||||| ||||||||||||| |||||||||||||  | | ||||| |  |||||||||||||||||||||    
T  32591417 atttactcaatttaggatttggatgtaagacatgtggtaaaaaaaatatttaatgattgagattttaaattaaaaaacaa 32591338  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 5466122 - 5466081
Alignment:
Q  97 gctcaatttactttatttagggtttggatgtaagatatgtgg 138  Q
    |||| ||||||| |||||||||||||||||||||| ||||||    
T  5466122 gctctatttactctatttagggtttggatgtaagacatgtgg 5466081  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 17914755 - 17914824
Alignment:
Q  111 atttagggtttggatgtaagatatgtggtaaaaaagtttctaatggtcaagattttaaattaaaaaacaa 180  Q
    |||||||||||||||| |||| |||||| |||||| | || ||  ||  |||||||||||||||||||||    
T  17914755 atttagggtttggatgcaagacatgtggcaaaaaaatatccaacagttgagattttaaattaaaaaacaa 17914824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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