View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5331_low_7 (Length: 239)
Name: NF5331_low_7
Description: NF5331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5331_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2646583 - 2646362
Alignment:
| Q |
1 |
ttgaagcacgaatttcctttatctctttttctctcctttaaattttattgattccatttatcaaggttgtcacttaaacagcactaaaaagtactacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2646583 |
ttgaagcacgaatttcctttatctctttttctctcctttaaattttattgattccatttatcaaggttgtcacttaaacaacactaaaaagtactacaat |
2646484 |
T |
|
| Q |
101 |
attctcttttccctccatttatcctcttttttatgtggtgtcttctagtatataaaccatgcctattgtcacatttcttcatcaatctctccctctttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2646483 |
attctcttttccctccatttatcctcttttttatgtggtgtcttctagtatataaaccatgcctattgtcacatttcttcatcaatctctccctctttca |
2646384 |
T |
|
| Q |
201 |
gcttctctatctataatagttc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
2646383 |
gcttctctatctataatagttc |
2646362 |
T |
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