View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5331_low_9 (Length: 211)
Name: NF5331_low_9
Description: NF5331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5331_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 28456852 - 28457035
Alignment:
| Q |
18 |
atatttagaaaagaaataaaatatatccagcaattnnnnnnn-ggctatagaaattcttaaaccttaaaattaaggttgcaaatatgattgtgaagctga |
116 |
Q |
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| T |
28456852 |
atatttagaaaagaaataaaatatatccagcaattaaaaaaaaggctatagaaattcttaaaccttaaaattaaggttgcaaatatgattgtgaagctga |
28456951 |
T |
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| Q |
117 |
attcggttgatttaacagtatagctacatgttttaatctgtccgaagcgcgaagtgaagcgtgttgctgatcttactgatgatg |
200 |
Q |
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| T |
28456952 |
attgggttgatttaacagtatagctacatgttctaatctgtccgaagcgcgaagtgaagcgtgttgctgatcttactgatgatg |
28457035 |
T |
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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 28523092 - 28523186
Alignment:
| Q |
108 |
tgaagctgaattcggttgatttaacagta--tagctacatgttttaatctgtccgaagcgcgaagtgaagcgtgttgctgatcttactgatgatg |
200 |
Q |
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| T |
28523092 |
tgaagctgaatttgattgacttaacagtagctagctacatgttctaatctgtccgaagcgcgaagtgaagcgtgttgccgatcttactgatgatg |
28523186 |
T |
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