View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5332-Insertion-1 (Length: 281)
Name: NF5332-Insertion-1
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332-Insertion-1 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 281
Target Start/End: Complemental strand, 5579920 - 5579645
Alignment:
| Q |
8 |
ctctagttaaacatgttcaagttatttgtatgcgttcattcttgtcctacctacatttgataccatattttcatatcaaatgacattattgtaaactaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5579920 |
ctctagttaaacatgttcaagttatttgtatgcgttcattcttgtcctacctacatttgataccatattttcatatcaaatgacattattgtaaactaga |
5579821 |
T |
|
| Q |
108 |
attaagtcaaat-agtgtaattggttctgccgccttacatttgagtg-aatttgtgtttgatagcttagttgataaatttagtaaaagaggtgattcaca |
205 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5579820 |
attaagtcaaataagtgtaattggttctgccgccttacatttgagtgaaatttgtgtttgatagcttagttgataaatttagcaaaagaggtgattcaca |
5579721 |
T |
|
| Q |
206 |
gttaaacggatgataatgatgataattaagttggttttcacaattgttaatgggtaagttgaataaacaaaatctg |
281 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5579720 |
gttaagcggatgataatgatgataattaagttggtttttacaattgttaatgggtaggttgaataaacaaaatctg |
5579645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 97 - 281
Target Start/End: Complemental strand, 5572192 - 5572007
Alignment:
| Q |
97 |
tgtaaactagaattaagtcaaata-gtgtaattggttctgccgccttacatttgagtgaatttgtgtttgatagcttagttgataaatttagtaaaagag |
195 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||||||||| || ||||| ||||| | ||||||||||||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
5572192 |
tgtaaactagaattaaatcaaataagtgcaattggttctaccaccttatgtttgattctatttgtgtttgatagtttatttgataactttagcaaaagag |
5572093 |
T |
|
| Q |
196 |
gtgattcacagttaaacggatgataatgatgataattaagttggttttcacaattgttaatgggtaagttgaataaacaaaatctg |
281 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||| |
|
|
| T |
5572092 |
gtgactcacagttaggtggatgataatgatgataattaagttggtttttacaattgttaatggatatgtggaataaacaaaatctg |
5572007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 5581645 - 5581470
Alignment:
| Q |
12 |
agttaaacatgttcaagttatttgtatgcgttcattcttgtcctacctacatttgataccatattttcatatcaaatgacattattgtaaactagaatta |
111 |
Q |
| |
|
||||||| | ||||||||||||||||| | ||||||||| |||||||||||||||| | || |||||||||||||| ||||||| ||||||||||| | |
|
|
| T |
5581645 |
agttaaataggttcaagttatttgtatacattcattcttttcctacctacatttgaagcaatcttttcatatcaaatagcattattataaactagaataa |
5581546 |
T |
|
| Q |
112 |
agtcaaa-tagtgtaattggttctgccgccttacatttgagtgaatttgtgtttgatagcttagttgataaattta |
186 |
Q |
| |
|
| ||||| |||||||||||||||| ||||||| ||||| | |||||||||||||| ||| ||||| |||||| |
|
|
| T |
5581545 |
aatcaaattagtgtaattggttctctcgccttaagtttgatttgatttgtgtttgataagttatttgatgaattta |
5581470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 5575187 - 5574930
Alignment:
| Q |
8 |
ctctagttaaacatgttcaagttatttgtatgcgttcatt----cttgtcctacctacatttgataccatattttcatatcaaatg--ac--attattgt |
99 |
Q |
| |
|
||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||| || || |||| ||||||||| || | || ||| |
|
|
| T |
5575187 |
ctctagttaaataggttcaagttatttgtacacgttcattaattcttgtcctacctacatttgaaacaatcttttaatatcaaattgtacggactactgt |
5575088 |
T |
|
| Q |
100 |
aaactagaattaagtcaaata-gtgtaattggttctgccgccttacatttgagtgaatttgtgtttgatagcttagttgataaatttagtaaaagaggtg |
198 |
Q |
| |
|
||||||||||||| | ||||| ||||||| ||||||| ||| | ||||| |||||||||||||| |||||||||| ||||| ||| |||||| |
|
|
| T |
5575087 |
aaactagaattaaataaaataagtgtaatatgttctgctacctcaagtttgatccgatttgtgtttgataagctagttgataactttagcaaaggaggtg |
5574988 |
T |
|
| Q |
199 |
attcacagttaaacggatgataatgatgataattaagttggttttcacaattgttaat |
256 |
Q |
| |
|
||| | |||| ||||||||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
5574987 |
gatcaaatttaagtggatgataatgatgatagttgagttggtttttacaattgttaat |
5574930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University