View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5332-Insertion-5 (Length: 391)

Name: NF5332-Insertion-5
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5332-Insertion-5
NF5332-Insertion-5
[»] chr2 (1 HSPs)
chr2 (8-391)||(6917005-6917398)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 6917005 - 6917398
Alignment:
Q  8 ctttcaacaatttggagttcattgattcattctgaattatcaccttcacaaagctaaggtttagaaacagtcacacagtgacagacgcagcaatgttcct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6917005 ctttcaacaatttggagttcattgattcattctgaattatcaccttcacaaagctaaggtctagaaacagtcacacagtgacagacgcagcaatgttcct 6917104  T
Q  108 ctgaatctcaataggcagaagaactgttggaagaaaattcagtttagtatcattcacggcggcgacagtgaagtctccgttgaaccgccttcattagtca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  6917105 ctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcattcacggcggcgacagtgaagtctccgccaaaccgccttcattagtca 6917204  T
Q  208 aagct-------cgccattgacagcaccccgagtttcccatggacacgctcagagattgatcctgaagccgcagcagtttgagacgagtccgctcccgta 300  Q
    |||||       ||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6917205 aagctcgagcagcgccattgacagcacgccgagtttcccacagacacgctcagagattgatcctgaagccgcagcagtttgagacgagtctgctcccgta 6917304  T
Q  301 tctggcaatcagtttgagctgtgctgtgctcgtggaagcctagccgcccaggaga--ccgcccaagaatt-atctgaagccgtgttcgttcccg 391  Q
    |||||||| |||||||||||||||  ||||||||||||| ||||| |||||||||  ||||||||||||| |||||||||||||||||||||||    
T  6917305 tctggcaaacagtttgagctgtgccatgctcgtggaagcgtagccacccaggagaggccgcccaagaattgatctgaagccgtgttcgttcccg 6917398  T

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