View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5332-Insertion-6 (Length: 290)
Name: NF5332-Insertion-6
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 73 - 290
Target Start/End: Original strand, 12191949 - 12192166
Alignment:
| Q |
73 |
acacacgcacatagaattaccacaatttacgtaatatttaatcataccggggatgaggaattctcaaagagctcaaatgtgctatgtcccctcacattag |
172 |
Q |
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| T |
12191949 |
acacacacacatagaattaccacaattaacgtaatatttaatcataccgggtatgaggaattctcaaagagctccaatgtgttatgttccctcacattag |
12192048 |
T |
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| Q |
173 |
aaacttctaaatctgtagaagagatccnnnnnnnatatcctagtcagtgataaaagggattaagaagttagtgaaaaattgattaacaaattttaagcaa |
272 |
Q |
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| T |
12192049 |
aaacttctaaatctgtagaagagatcctttttatatatcctagtcggtgataaaagcgattaagaagttagtgaaaaattgattaacaaattttaagcaa |
12192148 |
T |
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| Q |
273 |
atatcaataaccaaaaaa |
290 |
Q |
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| T |
12192149 |
atatcaataaccaaaaaa |
12192166 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 281
Target Start/End: Complemental strand, 12879596 - 12879424
Alignment:
| Q |
110 |
ttaatcataccggggatgaggaattctcaaagagctcaaatgtgctatgtcccctcacattagaaacttctaaatctgtagaagagatccnnnnnnnata |
209 |
Q |
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|||||||||||||| | ||||||||| |||| ||||| ||||| ||||| | ||||||||||| || || ||| ||| ||||| ||| ||| |
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| T |
12879596 |
ttaatcataccgggtaggaggaattcacaaaaagctcgtatgtgttatgtttcatcacattagaacctcctgaatttgttgaagatatctctttttcata |
12879497 |
T |
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| Q |
210 |
tcctagtcagtgataaaagggatt-aagaagttagtgaaaaattgattaacaaattttaagcaaatatcaata |
281 |
Q |
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| T |
12879496 |
acctaacaagttataaaaggaatttaagaaattagtgaaaaattgattaataaatgttgatcaaatatcaata |
12879424 |
T |
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