View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5332_high_10 (Length: 293)
Name: NF5332_high_10
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332_high_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 293
Target Start/End: Original strand, 2034694 - 2034977
Alignment:
| Q |
10 |
attattcttatcaatatctttcttggatagactcccctctgtatctgacttgaatttctccatcaccaagattatctctttttagtcaatttcaacatct |
109 |
Q |
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| T |
2034694 |
attattcttatcaatatctttcttggatggaatcccctctgtatctgacttgaatttctccatcatcaagattatctctttttagtcaatttcaacatct |
2034793 |
T |
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| Q |
110 |
ttgtaccatgatagaaacatcacattttgtatggttgttaggggtagttaatctatctcatcatgtaacatatgaagatatagtcattagttgttgtcca |
209 |
Q |
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| T |
2034794 |
ttgtaccatgatagaaacatcgcattttgtatgattgttaggggtagttaatctatctcttcatgtaacatatgaagatatagtcattagttgttgtcca |
2034893 |
T |
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| Q |
210 |
tctacatctttatgtaatgcatgaacatatattgatgtaacatgtaaagatgtagttgttacttgtaagttgttgttcatctat |
293 |
Q |
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| T |
2034894 |
tctacatcttcatgtaatgcatgaatatatattgatgtaacatgtaaagatgtagttgttacttgtaagttgttgttcatctat |
2034977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 3502247 - 3502180
Alignment:
| Q |
172 |
atgtaacatatgaagatatagtcattagttgttgtccatctacatctttatgtaatgcatgaacatat |
239 |
Q |
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|||||||| || || ||||||||||| | |||||| |||||||||||| ||||||| ||||| ||||| |
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| T |
3502247 |
atgtaacacattaaaatatagtcattggatgttgttcatctacatcttcatgtaatacatgatcatat |
3502180 |
T |
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