View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5332_high_2 (Length: 523)
Name: NF5332_high_2
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 8e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 42798428 - 42798249
Alignment:
| Q |
18 |
cattaactacaatgttgacaaagtagtaacatgttccaatattaatatgtgattctatcatgtctgctaaattttaatctgtgattcatacaagcttccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798428 |
cattaactacaatgttgacaaagtagtaacatcttccaatattaatatgtgattctatcatgtctgctaaattttaatctgtgattcatacaagcttccc |
42798329 |
T |
|
| Q |
118 |
aaatataagctatttctacacagaatcgacaaaagagagcattcatacaaatcaaatagaaattggatcagttttaagatat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42798328 |
aaatataagctatttctacacagaatcgacaaa--agagcattcatacaaattaaatagaaattggatcagttttaagatat |
42798249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 319 - 523
Target Start/End: Complemental strand, 42797791 - 42797600
Alignment:
| Q |
319 |
taattattttggaagttacgttgttttaatatgtatagggaaatggattgaatattttggtgaaggttagataaaactgcttctaaatgacacatcttat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42797791 |
taattattttggaagttacgttgttttaatatgtatagggaaatggattgaatattttggtgaaggttagataaaactgcttctaaatgacacatcttat |
42797692 |
T |
|
| Q |
419 |
cttccaaagaagtttttgatagttcaatatccttgttcaattttaccaattcgttggaatacattttctttctctatttgcaggctcaccctttgcttct |
518 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42797691 |
cttccaaagaagtttttgatagtt-------------caattctaccaattcgttggaatacattttctttctctatttgcaggctcaccctttgtttct |
42797605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 42798208 - 42798152
Alignment:
| Q |
269 |
gcacaactcatattatcaaacggtttcttgatttagcatatagttgataataattat |
325 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42798208 |
gcacaactcatattatcaaatggtttcttgatttagcatatagttgataataattat |
42798152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University