View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5332_high_6 (Length: 364)
Name: NF5332_high_6
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 8218968 - 8218820
Alignment:
| Q |
1 |
cagaacaatatgctactaagtggagtgagttgattgactttaatgacaaattatattctactggaaaaacacagttttgtagaatttagagaaaaaggaa |
100 |
Q |
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| T |
8218968 |
cagaacaatatgctactaattggattgagttgatttactttaacgactaattatattctactggaaaaacacagttttgtagaatttagagaaaaagaaa |
8218869 |
T |
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| Q |
101 |
ttgaaaagtatttgttattcggaggggcctgttgaagtgctagctttac |
149 |
Q |
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| T |
8218868 |
ttgaaaagtatttgttattcggaggggcctgttgaagtgctagctttac |
8218820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 211 - 357
Target Start/End: Complemental strand, 8218758 - 8218612
Alignment:
| Q |
211 |
agttttacgttctaatatgcttcttcttttttgtcgaaaaatgttctaatatgctaagaagacgatttgatgatccatgcagttcaatactccaaagact |
310 |
Q |
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| T |
8218758 |
agttttacgttctaatatgcttcttcttttttgtcgaaaaatgttctaatatgctaagaagaggatttgatgatccatgcagttcaatactccaaagact |
8218659 |
T |
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| Q |
311 |
cttttctttttctacctattgatttcttgcgtgccctattttcttcg |
357 |
Q |
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| T |
8218658 |
cttttctttttctatttattgatttcttgcacgccctaattttttcg |
8218612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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