View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5332_low_1 (Length: 653)
Name: NF5332_low_1
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 636
Target Start/End: Complemental strand, 6917009 - 6916394
Alignment:
| Q |
19 |
gaaaggacttggatatggccgcccttttggccagaccggaacaatatacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgc |
118 |
Q |
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| T |
6917009 |
gaaaggacttggatatggtcgcccttttggccagaccggaacaatatacaagaagcctgccatgattatcacctcatcaca--tttacagtcagaagtgc |
6916912 |
T |
|
| Q |
119 |
attgataagtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatata |
218 |
Q |
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| T |
6916911 |
attgataagtgaacaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatata |
6916812 |
T |
|
| Q |
219 |
tgataaatttaatattaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaa |
318 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916811 |
tgataaatttaatgttaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaa |
6916712 |
T |
|
| Q |
319 |
attttgttgacccnnnnnnntgaaccaaaactacaattcttttttctagataactacccccaataaatttaggaccgtgtacttgaaaggccatatcatt |
418 |
Q |
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| T |
6916711 |
attttgttgacccaaaaaaatgaaccaaaaccacaattcttttttccagataactacccccaaaaaatttaggaccgtgtacttgaaaggccatatcatt |
6916612 |
T |
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| Q |
419 |
cagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttcc |
518 |
Q |
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| T |
6916611 |
cagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttcc |
6916512 |
T |
|
| Q |
519 |
ctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaaca |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| ||||||||||| |
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| T |
6916511 |
ctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaaca |
6916412 |
T |
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| Q |
619 |
atcacaccttttctcttg |
636 |
Q |
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| T |
6916411 |
atcacaccttttctcttg |
6916394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 6890724 - 6890644
Alignment:
| Q |
64 |
atacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaa |
152 |
Q |
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| T |
6890724 |
atacaagaagcctgccatgaatatcacctcat--------tacagtcagaagtacattgacaagtgaaccaaaatctaaactagctgaa |
6890644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 413 - 521
Target Start/End: Original strand, 15035941 - 15036049
Alignment:
| Q |
413 |
atcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcacc |
512 |
Q |
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||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
15035941 |
atcattcaggtgccttattgcccttgtatgcgtttaccaattgggtctgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcacc |
15036040 |
T |
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| Q |
513 |
ctttccctg |
521 |
Q |
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||||||||| |
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| T |
15036041 |
ctttccctg |
15036049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 518 - 572
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
518 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
572 |
Q |
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| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 633
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
571 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
633 |
Q |
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||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| |||||| |
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| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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