View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5332_low_11 (Length: 292)

Name: NF5332_low_11
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5332_low_11
NF5332_low_11
[»] chr2 (19 HSPs)
chr2 (18-286)||(39814083-39814351)
chr2 (83-286)||(39910562-39910764)
chr2 (83-286)||(39927167-39927354)
chr2 (120-286)||(39825657-39825823)
chr2 (50-85)||(2841086-2841121)
chr2 (50-85)||(8973315-8973350)
chr2 (50-85)||(8979325-8979360)
chr2 (50-85)||(8984696-8984731)
chr2 (50-85)||(9008024-9008059)
chr2 (50-85)||(9023450-9023485)
chr2 (50-85)||(9026789-9026824)
chr2 (50-85)||(30732011-30732046)
chr2 (50-85)||(30733991-30734026)
chr2 (50-85)||(32918083-32918118)
chr2 (243-286)||(39902350-39902393)
chr2 (50-85)||(43850052-43850087)
chr2 (50-84)||(19232469-19232503)
chr2 (18-51)||(39910541-39910574)
chr2 (19-51)||(39927147-39927179)
[»] chr8 (5 HSPs)
chr8 (50-85)||(37679758-37679793)
chr8 (50-85)||(40054315-40054350)
chr8 (50-85)||(41841221-41841256)
chr8 (50-85)||(44878986-44879021)
chr8 (50-85)||(44880900-44880935)
[»] chr6 (2 HSPs)
chr6 (50-85)||(10791721-10791756)
chr6 (50-85)||(10795959-10795994)
[»] chr5 (3 HSPs)
chr5 (50-85)||(1716521-1716556)
chr5 (50-85)||(3643643-3643678)
chr5 (50-85)||(7524971-7525006)
[»] chr4 (7 HSPs)
chr4 (50-85)||(3461211-3461246)
chr4 (50-85)||(11652461-11652496)
chr4 (50-85)||(26984736-26984771)
chr4 (50-85)||(26998809-26998844)
chr4 (50-85)||(49106598-49106633)
chr4 (50-85)||(49108702-49108737)
chr4 (50-85)||(50077268-50077303)
[»] chr1 (18 HSPs)
chr1 (50-85)||(14652528-14652563)
chr1 (50-85)||(14654409-14654444)
chr1 (50-85)||(14662319-14662354)
chr1 (50-85)||(14664200-14664235)
chr1 (50-85)||(14667180-14667215)
chr1 (50-85)||(14669778-14669813)
chr1 (50-85)||(14674484-14674519)
chr1 (50-85)||(14676635-14676670)
chr1 (50-85)||(14679862-14679897)
chr1 (50-85)||(14681602-14681637)
chr1 (50-85)||(14683753-14683788)
chr1 (50-85)||(14706091-14706126)
chr1 (50-85)||(14708581-14708616)
chr1 (50-85)||(14716294-14716329)
chr1 (50-85)||(28366268-28366303)
chr1 (50-85)||(33988073-33988108)
chr1 (50-85)||(38175599-38175634)
chr1 (53-85)||(37422175-37422207)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 39814083 - 39814351
Alignment:
Q  18 atatgtttatttgtaaggatctaggttgtgtgtacctttctcggccttttggctatgatcaagtgtaggttgtgtgtagtaataatcccgttatggtaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  39814083 atatgtttatttgtaaggatctaggttgtgtgtacctttctcggccttttggctatgatcaagtgtaggttgtgtgtagtcataatcccgttattgtaat 39814182  T
Q  118 cggtcagccagatcttaaacgtttaatcaagatcagacggtctagatgtggcagacagctggctgcgttagtcacattgcacacaattcaaatccaattc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814183 cggtcagccagatcttaaacgtttaatcaagatcagacggtctagatgtggcagacagctggctgcgttagtcacattgcacacaattcaaatccaattc 39814282  T
Q  218 gcaatattctttcaaatagatgtccttgacaacgagttggataggaacataattgtttttgatgatgtc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  39814283 gcaatattctttcaaatagatgtccttgacaacgagttggataggaacataattctttttgatgttgtc 39814351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 83 - 286
Target Start/End: Original strand, 39910562 - 39910764
Alignment:
Q  83 taggttgtgtgtagtaataatcccgttatggtaatcggtcagccagatcttaaacgtttaatcaagatcagacggtctagatgtggcagacagctggctg 182  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  39910562 taggttgtgtgtagttataatcccgttattgtaaccggtcagccagatcttaaacgttcaatcaatatcagacggtctagatgtggcagacagctggctg 39910661  T
Q  183 cgttagtcacattgcacacaattcaaatccaattcgcaatattctttcaaatagatgtccttgacaacgagttggataggaacataattgtttttgatga 282  Q
     |||||||||||||||  ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||     
T  39910662 tgttagtcacattgcagtcaattcaaatccaattcacaatattctttc-aatagatgtccttgacaacgagttggatatcaacataattgtttttgatgt 39910760  T
Q  283 tgtc 286  Q
    ||||    
T  39910761 tgtc 39910764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 83 - 286
Target Start/End: Original strand, 39927167 - 39927354
Alignment:
Q  83 taggttgtgtgtagtaataatcccgttatggtaatcggtcagccagatcttaaacgtttaatcaagatcagacggtctagatgtggcagacagctggctg 182  Q
    ||||||||||||||| ||||||||||||| |||| ||||| ||||||||||||||||| |||||||||||           ||||||||||| |||||||    
T  39927167 taggttgtgtgtagtcataatcccgttattgtaaccggtctgccagatcttaaacgttcaatcaagatca-----------tgtggcagacaactggctg 39927255  T
Q  183 cgttagtcacattgcacacaattcaaatccaattcgcaatattctttcaaatagatgtccttgacaacgagttggataggaacataattgtttttgatga 282  Q
    |||||||||||     ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||     
T  39927256 cgttagtcaca-----cacaattcaaatccagttcgcaatattgtttcaaatagatgtccttgacaaccagttggatagaaacataattgtttttgatgt 39927350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 286
Target Start/End: Original strand, 39825657 - 39825823
Alignment:
Q  120 gtcagccagatcttaaacgtttaatcaagatcagacggtctagatgtggcagacagctggctgcgt-tagtcacattgcacacaattcaaatccaattcg 218  Q
    |||||||| |||||||||||| ||||  |||||||||||||||||||||| ||||| || || |||  ||| | |||||||||| ||||||||| |||||    
T  39825657 gtcagccacatcttaaacgttcaatcttgatcagacggtctagatgtggctgacagttgact-cgtgaagttagattgcacacagttcaaatcctattcg 39825755  T
Q  219 caatattctttcaaatagat-gtccttgacaacgagttggataggaacataattgtttttgatgatgtc 286  Q
    ||||| |||||   ||| || |||| ||||||| |||||||||  ||||||||||||||| ||| ||||    
T  39825756 caatagtcttt-tgataaatggtccatgacaacaagttggataacaacataattgttttttatgttgtc 39825823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 2841121 - 2841086
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2841121 tacctttctcggccttttggctaagatcaagtgtag 2841086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 8973315 - 8973350
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8973315 tacctttctcggccttttggctaagatcaagtgtag 8973350  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 8979325 - 8979360
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8979325 tacctttctcggccttttggctaagatcaagtgtag 8979360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 8984696 - 8984731
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8984696 tacctttctcggccttttggctaagatcaagtgtag 8984731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 9008024 - 9008059
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9008024 tacctttctcggccttttggctaagatcaagtgtag 9008059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 9023450 - 9023485
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9023450 tacctttctcggccttttggctaagatcaagtgtag 9023485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 9026789 - 9026824
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  9026789 tacctttctcggccttttggctaagatcaagtgtag 9026824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 30732011 - 30732046
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30732011 tacctttctcggccttttggctaagatcaagtgtag 30732046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 30733991 - 30734026
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30733991 tacctttctcggccttttggctaagatcaagtgtag 30734026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 32918083 - 32918118
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32918083 tacctttctcggccttttggctaagatcaagtgtag 32918118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 39902350 - 39902393
Alignment:
Q  243 ttgacaacgagttggataggaacataattgtttttgatgatgtc 286  Q
    ||||||||||||||||||| || |||||||||||||||| ||||    
T  39902350 ttgacaacgagttggatagcaaaataattgtttttgatgttgtc 39902393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 43850052 - 43850087
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  43850052 tacctttctcggccttttggctaagatcaagtgtag 43850087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 19232503 - 19232469
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgta 84  Q
    ||||||||||||||||||||||| |||||||||||    
T  19232503 tacctttctcggccttttggctaagatcaagtgta 19232469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 39910541 - 39910574
Alignment:
Q  18 atatgtttatttgtaaggatctaggttgtgtgta 51  Q
    |||||||||||||| |||||||||||||||||||    
T  39910541 atatgtttatttgttaggatctaggttgtgtgta 39910574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 39927147 - 39927179
Alignment:
Q  19 tatgtttatttgtaaggatctaggttgtgtgta 51  Q
    |||||||||||||| ||||||||||||||||||    
T  39927147 tatgtttatttgtacggatctaggttgtgtgta 39927179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 37679758 - 37679793
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37679758 tacctttctcggccttttggctaagatcaagtgtag 37679793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 40054315 - 40054350
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40054315 tacctttctcggccttttggctaagatcaagtgtag 40054350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 41841256 - 41841221
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41841256 tacctttctcggccttttggctaagatcaagtgtag 41841221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 44878986 - 44879021
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44878986 tacctttctcggccttttggctaagatcaagtgtag 44879021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 44880935 - 44880900
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  44880935 tacctttctcggccttttggctaagatcaagtgtag 44880900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 10791756 - 10791721
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10791756 tacctttctcggccttttggctaagatcaagtgtag 10791721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 10795994 - 10795959
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  10795994 tacctttctcggccttttggctaagatcaagtgtag 10795959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 1716556 - 1716521
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1716556 tacctttctcggccttttggctaagatcaagtgtag 1716521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 3643643 - 3643678
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3643643 tacctttctcggccttttggctaagatcaagtgtag 3643678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 7524971 - 7525006
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7524971 tacctttctcggccttttggctaagatcaagtgtag 7525006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 3461246 - 3461211
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  3461246 tacctttctcggccttttggctaagatcaagtgtag 3461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 11652496 - 11652461
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11652496 tacctttctcggccttttggctaagatcaagtgtag 11652461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 26984771 - 26984736
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26984771 tacctttctcggccttttggctaagatcaagtgtag 26984736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 26998844 - 26998809
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26998844 tacctttctcggccttttggctaagatcaagtgtag 26998809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 49106633 - 49106598
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  49106633 tacctttctcggccttttggctaagatcaagtgtag 49106598  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 49108737 - 49108702
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  49108737 tacctttctcggccttttggctaagatcaagtgtag 49108702  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 50077303 - 50077268
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  50077303 tacctttctcggccttttggctaagatcaagtgtag 50077268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14652528 - 14652563
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14652528 tacctttctcggccttttggctaagatcaagtgtag 14652563  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 14654444 - 14654409
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14654444 tacctttctcggccttttggctaagatcaagtgtag 14654409  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14662319 - 14662354
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14662319 tacctttctcggccttttggctaagatcaagtgtag 14662354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 14664235 - 14664200
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14664235 tacctttctcggccttttggctaagatcaagtgtag 14664200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 14667215 - 14667180
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14667215 tacctttctcggccttttggctaagatcaagtgtag 14667180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 14669813 - 14669778
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14669813 tacctttctcggccttttggctaagatcaagtgtag 14669778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14674484 - 14674519
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14674484 tacctttctcggccttttggctaagatcaagtgtag 14674519  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14676635 - 14676670
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14676635 tacctttctcggccttttggctaagatcaagtgtag 14676670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14679862 - 14679897
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14679862 tacctttctcggccttttggctaagatcaagtgtag 14679897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14681602 - 14681637
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14681602 tacctttctcggccttttggctaagatcaagtgtag 14681637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14683753 - 14683788
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14683753 tacctttctcggccttttggctaagatcaagtgtag 14683788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14706091 - 14706126
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14706091 tacctttctcggccttttggctaagatcaagtgtag 14706126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14708581 - 14708616
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14708581 tacctttctcggccttttggctaagatcaagtgtag 14708616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 14716294 - 14716329
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  14716294 tacctttctcggccttttggctaagatcaagtgtag 14716329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 28366303 - 28366268
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  28366303 tacctttctcggccttttggctaagatcaagtgtag 28366268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 33988073 - 33988108
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  33988073 tacctttctcggccttttggctaagatcaagtgtag 33988108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 38175634 - 38175599
Alignment:
Q  50 tacctttctcggccttttggctatgatcaagtgtag 85  Q
    ||||||||||||||||||||||| ||||||||||||    
T  38175634 tacctttctcggccttttggctaagatcaagtgtag 38175599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 37422175 - 37422207
Alignment:
Q  53 ctttctcggccttttggctatgatcaagtgtag 85  Q
    |||||||||||||||||||| ||||||||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtag 37422207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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